Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03872 ATGGCGAATTTGGATCACACTCACTTCTCCGACAACGACGATTTTGAACTTCCTCTCACTCAACCTCTATCACTTTCCAACAATCAAGGACCATCCAAGAAACCCAAAACCAAAACGACTCCGTTTCCTGGCAAAGAGAACATTCCCCCTTACGAAATCGGTAACTGTAGCTTGGATTTCATTCCTTCCACCTTAGATTCCGAAGCCTCTGTTCAAGCGGTTTGTTCTTCTGTGTCGGAGCTGAAGAAGGATAATAAACGCGCTTATTCGAACAATTCGTTAGAGTCTAAGCTGGTGGTATCGAGAACGAAGACGTTTGATTATGGAGAGTCTGGTTCGAAGGGGAATTCGCGCGATGAGTATGATGGTTCAGTTGATTGTCCTCTTTGTGGTGATGATATTTCTAATTTAACGGAGGAAGAGCGGAATCTTCATTCCAATCACTGTCTTGATAAAACTGGAGAAGATGTTGCTCTTCCTAGTGATGAGGTGGGTGCTCAATTTGGGCCCAAAGTTTCGCCTGTTGTTGATTGGATACGTGATCTCGGTTTAACTAAATATGAAGAAGTTTTTGTTAGGGAAGAAGTTGATTGGGATACCTTGCAATGGCTGACTGAAGAGGATCTCTTAAACATGGGTATATCTGCACTTGGTCCCAGAAAAAAGATTGTGCATGCCCTCTCAGAACTTAGAAGAGGAGTTGCCCCTTCAAATGAGAATCAAGAGAATTCTGGGGTAGAGCCCAGGAGGATTAGAAACCAGAATGTCAGATTGCAACATGACAAATCTGAACGAAAAGTTGACAGTACCGTTAAACCAGTAGCAAACAAATTGATTACCGAATATTTTCCGGGATTTTCTACCAATGAGAAGAAAGTTACCGCACCACCTCCCGTAGAACAACAAGAAGTGAAAAACAGTGGCTCAGTTTCTGGTCGTAAGCGCAAAGCAAAAAATATGTCAACAAGTACAAAGACTCGTGATGTTCCTAAATGGTGTGCCATACAAGGAACACCTTTCCGTGTGGATGCTTTCAAATACCTAAGAGGAGATTGTTCCTACTGGTTTCTTACACACTTCCACATGGACCATTATCAAGGTCTCACCAAGTCGTTCAATCATGGAAAGATCTATTGCTCCTCTGTTACAGCTAGACTTGTAAATATGAACATAGGGATTCCATATGATAAATTACATATTTTGCCTCTAAACCAAAAGGTTGAAATAGCTGGTATTGGCGTGACTTGCTTGGATGCCAACCACTGTCCAGGTTCCATAATAATACTCTTTCAACCTCCGAATGGTCAGGTGGTACTTCACACAGGTGATTTTCGTTATAGTGAAGAAATGGCAAACAACCCTTTTCTGCAGATACGTCCTATTAATACTTTAATTCTTGATACCACATACTGCAATCCGCAATATGATTTTCCAAAACAAGAGGCTGTAATACAATTTGTTATTGACGCCATTCAAGCAGAAGCTTTTAATCCCAAGACTCTTTTTCTGATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGTTCGCTTCGCAAAAAGGTTTACGTAACTGCAGCAAAATTACGCCTTTTAAACTGTTTAGAATTTACTGAGGAGGATATGCAGTGGTTTACTTCAAATGAGCATGAAAGCAATATTCATGTTGCCCCTATGTGGACACTCGCAAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATGCGAGTCGGTTCAGTCTTATAGTTGCTTTCTCTCCTACTGGTTGGACATTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGGTGGCAGCAGGGTACTGTTATAAGGTATGAAGTTCCTTACAGCGAGCATTCCAGCTTTACAGAACTCAAAGAGTTTGTAAATTTTGTGTCTCCCAATAACATTATACCAAGTGTGAATAATGATGGACCAGAATCTGCGGAAGCAATGGTTTCTCTCCTGTCAACTTGA 1989 0.4113 MANLDHTHFSDNDDFELPLTQPLSLSNNQGPSKKPKTKTTPFPGKENIPPYEIGNCSLDFIPSTLDSEASVQAVCSSVSELKKDNKRAYSNNSLESKLVVSRTKTFDYGESGSKGNSRDEYDGSVDCPLCGDDISNLTEEERNLHSNHCLDKTGEDVALPSDEVGAQFGPKVSPVVDWIRDLGLTKYEEVFVREEVDWDTLQWLTEEDLLNMGISALGPRKKIVHALSELRRGVAPSNENQENSGVEPRRIRNQNVRLQHDKSERKVDSTVKPVANKLITEYFPGFSTNEKKVTAPPPVEQQEVKNSGSVSGRKRKAKNMSTSTKTRDVPKWCAIQGTPFRVDAFKYLRGDCSYWFLTHFHMDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKLHILPLNQKVEIAGIGVTCLDANHCPGSIIILFQPPNGQVVLHTGDFRYSEEMANNPFLQIRPINTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPKTLFLIGSYTIGKERLFLEVARSLRKKVYVTAAKLRLLNCLEFTEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYASRFSLIVAFSPTGWTFGKGKKKSPGRRWQQGTVIRYEVPYSEHSSFTELKEFVNFVSPNNIIPSVNNDGPESAEAMVSLLST 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03872 662 CDD SNM1A-1C-like_MBL-fold 321 473 - -
Vifa2g03872 662 MobiDBLite consensus disorder prediction 234 250 - -
Vifa2g03872 662 MobiDBLite consensus disorder prediction 17 36 - -
Vifa2g03872 662 MobiDBLite consensus disorder prediction 234 253 - -
Vifa2g03872 662 SUPERFAMILY SAM/Pointed domain 171 232 IPR013761 -
Vifa2g03872 662 ProSiteProfiles SAM domain profile. 170 233 IPR001660 GO:0005515
Vifa2g03872 662 SMART SAM_4 167 233 IPR001660 GO:0005515
Vifa2g03872 662 SUPERFAMILY Metallo-hydrolase/oxidoreductase 340 645 IPR036866 -
Vifa2g03872 662 Gene3D - 476 623 - -
Vifa2g03872 662 Pfam DNA repair metallo-beta-lactamase 544 648 IPR011084 -
Vifa2g03872 662 FunFam DNA ligase 6 335 494 - -
Vifa2g03872 662 Gene3D - 335 645 IPR036866 -
Vifa2g03872 662 Pfam SAM domain (Sterile alpha motif) 171 231 IPR001660 GO:0005515
Vifa2g03872 662 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 324 657 - -
Vifa2g03872 662 MobiDBLite consensus disorder prediction 300 323 - -
Vifa2g03872 662 Pfam Beta-lactamase superfamily domain 356 475 IPR001279 -
Vifa2g03872 662 FunFam DNA cross-link repair 1A protein 476 623 - -
Vifa2g03872 662 CDD SAM_superfamily 175 229 - -
Vifa2g03872 662 MobiDBLite consensus disorder prediction 1 48 - -
Vifa2g03872 662 Gene3D - 169 242 IPR013761 -
Vifa2g03872 662 MobiDBLite consensus disorder prediction 290 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03872 Vifa-Chr2 1130492431 1130497438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03872 173 227 Glycosyltransferase AT3G07170 49.091 1.03e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03872 K15340 - gmx:100816321 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03872 2 1130492431 1130497438 Vifa2g03872 2 1130492431 1130497438 ECH