Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03871 ATGGCGGCGGAGGAGGGATGGTGCGTAGTCACCGGCGGGCGTGGGTTCGCCGCACGACATTTAGTCGAAATGCTAATCCGATTAAACACCTACTGCGTTCGCATCGCCGATTTGGGACCCACTATTGAACTCGAACCCTCCGAACAATTAGGCCTTCTCGGTCAAGCTCTACACTCCGGTCGTGCTCAATACGTCTCCCTCGATCTTCGCAACAAACCCCAACTCCTAAAAGCATTTCAAGGAGTTGAAGCTGTGTTTCATATGGCTGCTCCTAATTCTTCTATTAACAATTATCAGTTACATTATTCTGTTAGTGTTCAAGGAACAAAGAATGTTATTGAAGCATGTGTGGAGTTAAAAGTGAAGAGGCTCGTTTACACTAGTTCTCCTAGTGTTGTTTTTGACGGTGTTCATGGAGTTCATAATGGAAATGAATCATTGCCTTATCCACCTAAGCATAATGATCATTACTCGGCAACTAAAGCGGAAGGTGAAGCGTTGGTTATTAAGGCTAACGGGACTGGTGGACTACTGACGTGCTGCATACGCCCTAGCAGCATTTTTGGACCTGGTGATAAACTCTTGGTGCCGTCATTGGTTGATGCTGCCAGGGCAGGGAAATCCAAGTTCATTATTGGTGATGGCAATAATGTATATGATTTCACATATGTTGAAAATGTGGCGCATGCCCATATTTGTGGTGATCGAGCTCTAGCTTCAGAGGGAAGCATTTCCGAGAAAGCTGCAGGACAGGCTTACTTCATCACAAATATGGAACCTATAAAGTTTTGGGAATTCATGTCTCTGATTTTGGAAGGTCTTGGATATCAAAGGCCAAGAATAAAGATCCCTGCATTTGTCGTCATGCCAATTGCACATTTGGTGGAGTTGATATATAGGCTTCTTGGCCCATATGGAATGAAGGTGCCTCAGCTAACCCCGTCAAGAATAAGGCTCTTATCTTGCACCAGATCTTACGATAGCTCAAAAGCAAAGGATCGCCTTGGCTATGTACCCATCGTAACTCTACAGGAAGGCTTGCGGAGGACAATTGAATCATACCCACATTTGAGGGCCGAAAATCAACTTACGACTGAAAGAGAAGGTCCCTCCAAAGCTTATATATATCTTGGAAGTGGAAGAGTTGCGGACACTTTGCTTTGGAAGGATAAAAAGCAAACTTTCACTACATTGTTAGTCTTGATAGCAATATATGTCAACTTCATTGCATCTGAGAATACCTTCATTACTGCTCTTGCAAAGCTTCTAATATACTCATCGATCGGTTTATTCATTCATGGCATTCTTCCTGCAAAAATATTGGGGTACACTATTGAGAAAATGCCACCATCATGGTTTCACTTATCAGAAGATAGGTCAAATCGAATTGCTCTCAGAGTAGCCTCATCTTGGAATTTTACTGTGAGTGCTTTAAAATCTCTCGCAGAAGGGAATAATTCGGTGTTGTTCTTCAAGGTTGTTTTCTCTCTGCTCATTCTTAGCTTCCTGGGAGCATTTTCACTTCATAACTTGTATACTATAGGATTTACCTTAGCATTTATAGCTTTCTACGTTTATGAAAAGAAGGAGGAAGACATTGACAGCATATTCTTAAAAACACATACTTTTGGGTGCAAGTTGAAATCTGATATCACGAAGAAGTTTCTTACTTCAAAGAAGATTGATTGA 1689 0.4198 MAAEEGWCVVTGGRGFAARHLVEMLIRLNTYCVRIADLGPTIELEPSEQLGLLGQALHSGRAQYVSLDLRNKPQLLKAFQGVEAVFHMAAPNSSINNYQLHYSVSVQGTKNVIEACVELKVKRLVYTSSPSVVFDGVHGVHNGNESLPYPPKHNDHYSATKAEGEALVIKANGTGGLLTCCIRPSSIFGPGDKLLVPSLVDAARAGKSKFIIGDGNNVYDFTYVENVAHAHICGDRALASEGSISEKAAGQAYFITNMEPIKFWEFMSLILEGLGYQRPRIKIPAFVVMPIAHLVELIYRLLGPYGMKVPQLTPSRIRLLSCTRSYDSSKAKDRLGYVPIVTLQEGLRRTIESYPHLRAENQLTTEREGPSKAYIYLGSGRVADTLLWKDKKQTFTTLLVLIAIYVNFIASENTFITALAKLLIYSSIGLFIHGILPAKILGYTIEKMPPSWFHLSEDRSNRIALRVASSWNFTVSALKSLAEGNNSVLFFKVVFSLLILSFLGAFSLHNLYTIGFTLAFIAFYVYEKKEEDIDSIFLKTHTFGCKLKSDITKKFLTSKKID 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03871 562 Pfam Reticulon 382 537 IPR003388 -
Vifa2g03871 562 Gene3D - 1 358 - -
Vifa2g03871 562 ProSiteProfiles Reticulon domain profile. 382 534 IPR003388 -
Vifa2g03871 562 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 283 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vifa2g03871 562 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 8 353 - -
Vifa2g03871 562 FunFam Reticulon-like protein 1 359 - -
Vifa2g03871 562 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 354 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03871 Vifa-Chr2 1130161088 1130165629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03871 9 371 Lipid Metabolism Gene Families AT2G33630 32.021 3.12e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03871 K23558 - gmx:100816854 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03871 2 1130161088 1130165629 Vifa2g03871 2 1130161088 1130165629 ECH