Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03858 ATGGGATTAGTTTGCAGCAGAAATCGGCGTTATCGGGATTCCGATCCTGAAGAAAATGCACAGGCAGCAGAAATTGAGAGAAGAATAGAGTCAGAAACAAAGGCTGAAAAACATATTCAGAAACTTCTACTACTAGGTGCGGGAGAGTCAGGGAAATCTACAATTTTTAAGCAGATTAAACTTTTGTTTCAAACTGGCTTTGATGAGGCTGAGCTAAGAAGTTACACACCAGTCATTTTTGCTAATGTGTATCAGACTATAAAAGTACTGCATGATGGGGCAAAGGAGTTGGCTCAAAATGATCTTAATTCTGCAAAATATGTTATATCCGATGAGAGCAAGGACATTGGTGAAAAACTTTCAGAAATTGGAGGCAGGCTGGATTATCCACATCTCACCAAGGATCTTGCAAAGGAAATAGAGACTCTATGGGAGGATGCTGCCATTCAGGAAACATATGCCCGTGGTAATGAACTCCAAGTTCCTGATTGTACCAAATATTTCATGGAAAATTTGCAGAGGCTGTCTGAAGCAAATTACGTTCCTACAAAGGAGGATGTTTTGTATGCAAGAGTTCGTACAACTGGTGTTGTGGAGATCCAGTTCAGCCCTGTTGGAGAAAATAAGAGAAGTGGTGAAGTCTATAGACTTTTTGATGTTGGTGGCCAGAGAAATGAGAGGAGAAAATGGATCCATCTTTTTGAAGGAGTTACAGCTGTTATATTCTGTGCTGCAATTAGCGAGTATGATCAAACACTTTTTGAGGATGAAAGCAAGAACAGAATGATGGAAACTAAGGAACTTTTTGAATGGATCCTGAAGCAACCATGTTTTGAGAAAACATCCTTCATGTTATTTTTAAACAAGTTTGACATATTTGAGAAGAAGATCCTCAATGTTCCGCTCAACGTATGTGAATGGTTCAAAGATTATCAGCCAGTTTCAACAGGGAAACAAGAGATTGAGCACGCATATGAGTTTGTGAAGAAAAAGTTTGAGGAATTGTACTTCCAGAGCTCTGCTCCTGACCGTGTAGATCGTGTCTTCAAGATCTATCGGACCACTGCCCTTGATCAGAAGGTTGTGAAGAAGACTTTCAAGCTTGTTGATGAGACGTTGAGGCGGAGGAATCTTTTTGAAGCTGGATTATTATGA 1155 0.3991 MGLVCSRNRRYRDSDPEENAQAAEIERRIESETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELRSYTPVIFANVYQTIKVLHDGAKELAQNDLNSAKYVISDESKDIGEKLSEIGGRLDYPHLTKDLAKEIETLWEDAAIQETYARGNELQVPDCTKYFMENLQRLSEANYVPTKEDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDESKNRMMETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILNVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSSAPDRVDRVFKIYRTTALDQKVVKKTFKLVDETLRRRNLFEAGLL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03858 384 ProSiteProfiles G-alpha domain profile. 38 384 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 Pfam G-protein alpha subunit 22 372 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 CDD G-alpha 40 378 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 SMART galpha_1 19 383 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 FunFam Guanine nucleotide-binding protein alpha-1 subunit 68 193 - -
Vifa2g03858 384 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 18 380 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 Gene3D - 41 372 IPR027417 -
Vifa2g03858 384 SUPERFAMILY Transducin (alpha subunit), insertion domain 67 192 IPR011025 GO:0007165
Vifa2g03858 384 MobiDBLite consensus disorder prediction 8 23 - -
Vifa2g03858 384 FunFam Guanine nucleotide-binding protein alpha-1 subunit 178 371 - -
Vifa2g03858 384 Gene3D - 68 193 IPR011025 GO:0007165
Vifa2g03858 384 PRINTS Alpha G protein (transducin) signature 41 56 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 PRINTS Alpha G protein (transducin) signature 215 232 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 PRINTS Alpha G protein (transducin) signature 180 202 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 PRINTS Alpha G protein (transducin) signature 237 265 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 PRINTS Alpha G protein (transducin) signature 283 292 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa2g03858 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 381 IPR027417 -
Vifa2g03858 384 PRINTS Plant G protein alpha subunit signature 27 36 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vifa2g03858 384 PRINTS Plant G protein alpha subunit signature 319 334 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vifa2g03858 384 PRINTS Plant G protein alpha subunit signature 200 215 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vifa2g03858 384 PRINTS Plant G protein alpha subunit signature 270 281 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vifa2g03858 384 PRINTS Plant G protein alpha subunit signature 77 90 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vifa2g03858 384 PRINTS Plant G protein alpha subunit signature 92 106 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vifa2g03858 384 PRINTS Plant G protein alpha subunit signature 116 130 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vifa2g03858 384 PRINTS Plant G protein alpha subunit signature 336 348 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vifa2g03858 384 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03858 Vifa-Chr2 1125330117 1125333415 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03858 K19729 - gmx:547804 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03858 2 1125330117 1125333415 Vifa2g03858 2 1125330117 1125333415 ECH