Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03857 ATGGATACTAAAAGACTATATTGGGCCATTATTGTATCATGGCTTACTTTGTTTCAAGGAAACATGTTACATGCTAAGGGTGGATTTAATTATAAAGAAGCTCTCACAAAATCTCTTATCTTCTTGGAGGCACAAAGATCAGGGAAACTTCCTCCCAATAATAGAGTCCCTTGGAGAGGAGACTCGGCGCTTGACGACGGCAAACTCGCAAATGTGGATTTAGCTGGAGGATATTATGATGCAGGAGATAATGTGAAATATGGATTACCAATGGCTTTTACTGTGACTACATTATCATGGGCTGCAATATTTTACAAAGCAGAACTTGAAGCAGCAAAGGAAATGGGAAATGTTCAAGATGCAATTAAATGGGGTACAGATTATTTTCTAAAATGTAGTTCTAGAAGAAACAGATTATATGTTGAGGTAGGAGACCCACAAGAGGATCACAATTGTTGGGCTCCACCTGAAAAAATGAAGACAAAAAGATCTGTTAAAGTTATTGATGCTAATCAACCTGGTTCTGAGATTGCTGCTGAAACTGCTGCTGCTATGGCTTCTTCTTCCATTGTTTTTAGATCCGTGGATAGTAAATATGCTCGCAGTCTCCTCAACAAAGCAAAATTGCTTTTCGAATTTGCAAAAGCACATCGAGGAACCTATGATGGAACATGTCCCTTCTACTGCTCCTATTCAGGCTATAATGATGAACTAATGTGGGCAGCAGCATGGCTATACATGGCAACAAAGAAACCAATATACATGAAATACATACAAGAAGAAGCAATTAGTGCCGCTGTTGCTGAATTCAGCTGGGATCTTAAATACGCTGGAGTTCAAGTTCTTTTAACTCAGTTACATTTTGAGGGTCAAAAAGGTCTTGAAACATTCAAATTACACGGCGAAAGTTACATATGTTCGGTCCTTCCTGAAAGTCCTTACCATCAAATTAATTTATCTCCAGGTGGATTTATTCATATGAGAGATGGAGCCAACACACAATATGCCACAAGCACATCTTACTTGTTTGCTGTTTATAGTGATTTGCTTGCCAAATATAAGCAAAAAATCAAATGTGGAGGCAAAGAATTTGACTCAGCCCATATCTTTGCTTTTGCTAAGAAACAAATTGATTACATATTGGGGGAGAATCCAGAAGGAAGATCATACATGGTAGGATTTGGGAAAAACCCACCAACACAAGCTCACCATAGAGGTGCTTCAGTGCCAACATTGGGACCAAATGAAGAGGTAAGTTGTCCAATGAGCTTTGGAAAATGGCTACAAAGAGATGCACCAAATCCACATGAGTTAACCGGAGCCATTGTTGGTGGACCTGACATCAACGACAAGTTCAACGACAAACGTACCGATTCACCTAAGACTGAACCTTGCTCATATGTTAATTCTATTGCTGTTGGAACTCTTGCTAAGCTTGCTTCTTTGGGTTAA 1452 0.3926 MDTKRLYWAIIVSWLTLFQGNMLHAKGGFNYKEALTKSLIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLAGGYYDAGDNVKYGLPMAFTVTTLSWAAIFYKAELEAAKEMGNVQDAIKWGTDYFLKCSSRRNRLYVEVGDPQEDHNCWAPPEKMKTKRSVKVIDANQPGSEIAAETAAAMASSSIVFRSVDSKYARSLLNKAKLLFEFAKAHRGTYDGTCPFYCSYSGYNDELMWAAAWLYMATKKPIYMKYIQEEAISAAVAEFSWDLKYAGVQVLLTQLHFEGQKGLETFKLHGESYICSVLPESPYHQINLSPGGFIHMRDGANTQYATSTSYLFAVYSDLLAKYKQKIKCGGKEFDSAHIFAFAKKQIDYILGENPEGRSYMVGFGKNPPTQAHHRGASVPTLGPNEEVSCPMSFGKWLQRDAPNPHELTGAIVGGPDINDKFNDKRTDSPKTEPCSYVNSIAVGTLAKLASLG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03857 483 Gene3D - 25 483 IPR012341 GO:0005975
Vifa2g03857 483 Pfam Glycosyl hydrolase family 9 31 475 IPR001701 GO:0004553|GO:0005975
Vifa2g03857 483 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 379 405 IPR018221 -
Vifa2g03857 483 SUPERFAMILY Six-hairpin glycosidases 28 481 IPR008928 GO:0005975
Vifa2g03857 483 PANTHER ENDO-1,4-BETA-GLUCANASE 21 480 - -
Vifa2g03857 483 FunFam Endoglucanase 27 482 - -
Vifa2g03857 483 MobiDBLite consensus disorder prediction 441 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03857 Vifa-Chr2 1125327024 1125328858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03857 21 481 Glycoside Hydrolase AT3G43860 69.048 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03857 K01179 - gmx:100811509 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03857 2 1125327024 1125328858 Vifa2g03857 2 1125327024 1125328858 ECH