Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03800 ATGGATTTCAGGCTAATGGGTTTGGATTCTCCTCTGTTGAACACTCTCCACCACATTATTGACTTCAATGACGACACAACCGACAAGAATTTAAACGCTCCAACAAGAACATATGTTCGTGATGCAAAGGCAATGGCTGCAACTCCAGCGGACGTGAAAGAGTATCCAAATTCATACGTTTTTGTAGTGGACATGCCTGGGTTGAAATCTGGTGACATTAAGGTTCAGGTAGAAGATGAGAATGTGCTAATGATAAGTGGTGAGAGGAAGAGAGAAGAAGAGAAAGAAGGTGTTAAATATTTGAAGATGGAAAGAAGGGTTGGTAAGTTTATGAGGAAATTTGTGTTACCTGAGAATGCTAATGTTGAAGGCATTTCTGCTATTTGTCAAGATGGTGTTCTCACTGTTACTGTTAATAAATTACCTCCACCTGAACCCAAAAAGCCTAAGACTATTGAGGTTAAGATCGCTTGA 474 0.3987 MDFRLMGLDSPLLNTLHHIIDFNDDTTDKNLNAPTRTYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEDENVLMISGERKREEEKEGVKYLKMERRVGKFMRKFVLPENANVEGISAICQDGVLTVTVNKLPPPEPKKPKTIEVKIA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03800 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 157 IPR002068 -
Vifa2g03800 157 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Vifa2g03800 157 SUPERFAMILY HSP20-like chaperones 25 149 IPR008978 -
Vifa2g03800 157 FunFam 17.3 kDa class II heat shock protein-like 11 156 - -
Vifa2g03800 157 Gene3D - 12 156 IPR008978 -
Vifa2g03800 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 13 155 IPR031107 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03800 Vifa-Chr2 1113138628 1113139101 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03800 K13993 - pvy:116117493 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03800 2 1113138628 1113139101 Vifa2g03800 2 1113138628 1113139101 ECH