Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03799 ATGCGAATCCGAAAGGCAACTCAGAAGAACAAGAAGAATGTCGCGGCCGCCGGCGCCGGCGCCGGCAAAGAAGAAAACAAAGTAAACACGGCCAAATTGAAAGGCGCAGAGAGGTCAGCCTATTTCGCACGGAGAGAAGCCGCAAAGATACTGAGAACCGTACTCGAAGGAGACGCTAACCGCCGTGCTCTTGCTTCCATCAAAACCCTCGTTTATCATCCTTCCATCAGAAACAAGAAAGCCACATTTGCTCTCATCTGTCAAACCCTTAAACATCTTTCCATTATCAATGATGTTTTGCAAGCTGCTTCTATTCTCAACACCAAGTGGAAGAAGCAACAAGAATTGGTTTATATCATTGTCTATGATATCCTTTTCGGTCAGGGAGTTCCACTGGTTGGTGATGCTGAGAAGTACCTCATGCGCCACAAGGATCCCCTACATTTACATCTGAAAAAGGTTTTGTCACGGAAGAATGTGACGACTGTTAAAGACTTGTTTGCTCTACAAGAGGTTCCGGATATTTCTGTACCTCGAAATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTAGTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATGATTTACTGCCTGACTTATTAGTGCTCCCTCCAGGAACCGATTTACATGATCATCCTCTTGTCAAGAATGGAAGCATATTTCTGCAAGGCAAGGCGAGTTCCATGGTGGCACCGGCACTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCATGCGCGGCACCTGGCAACAAAACTGTCCACCTTGCCGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTGAAAAAGGAAAGGATTAAGCGCTTGAATGACACCGTAAAGCTATCCGGCGCTTCCAATATACAGGTTCTCAATGAGGATTTCTTGAACATAAATCCCAAGGACCCTTCATATTCTAAGTTAAAAGCTATTCTTTTAGATCCTTCCTGCTCTGGTTCTGGTACTGCCGCTTCTAGACTAGACCATCTGCTTCCGTCTAAAGCAACAGGTGATATTGACACAGAAAGATTAAACAAGCTTGCAGCTTTTCAGAGAAAAGCTCTTCAGCATGCTTTCCTTTTTCCAGCTTTGGAAAGAATTGTATACAGTACTTGTTCCATAAACCAAATTGAGAATGAAGATGTTGTGAAATCTGTTCTGCCCATAGCCGAGTCGTATGGATTCCAACTGGCAAAGCCATTCCCCGAGTGGCAGTGTCGTGGTCTTCCGGTCTTTGAAGGCGCTGAAAACCTGGTTCGAACAGATCCTGCCAAGCATGGAGAGGGTTTCTTCATTGCCTTGTTTGTCAAGAAAGATGCTAACCTTTCAGTGAGGTCAAATAAAAATGTTAATAAGACTCTCCCCAATTCTACCAGAATTAGAAACGTGCGAAGGAAGATACCGATGTTCATTCACACTAACATGTTCAAAATGTGGTTACATGGTCAAAATTGGAGGGATAGAAGATATTTTTCTTGCCAGTGTAAAAGCCATTCATAA 1545 0.4375 MRIRKATQKNKKNVAAAGAGAGKEENKVNTAKLKGAERSAYFARREAAKILRTVLEGDANRRALASIKTLVYHPSIRNKKATFALICQTLKHLSIINDVLQAASILNTKWKKQQELVYIIVYDILFGQGVPLVGDAEKYLMRHKDPLHLHLKKVLSRKNVTTVKDLFALQEVPDISVPRNVRVNTLKLDVDSALVELQKKYSVQKDDLLPDLLVLPPGTDLHDHPLVKNGSIFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELKKERIKRLNDTVKLSGASNIQVLNEDFLNINPKDPSYSKLKAILLDPSCSGSGTAASRLDHLLPSKATGDIDTERLNKLAAFQRKALQHAFLFPALERIVYSTCSINQIENEDVVKSVLPIAESYGFQLAKPFPEWQCRGLPVFEGAENLVRTDPAKHGEGFFIALFVKKDANLSVRSNKNVNKTLPNSTRIRNVRRKIPMFIHTNMFKMWLHGQNWRDRRYFSCQCKSHS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03799 514 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g03799 514 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 180 453 IPR029063 -
Vifa2g03799 514 Gene3D Vaccinia Virus protein VP39 235 460 IPR029063 -
Vifa2g03799 514 Pfam 16S rRNA methyltransferase RsmB/F 245 450 IPR001678 GO:0008168
Vifa2g03799 514 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 65 453 IPR023267 GO:0001510
Vifa2g03799 514 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 169 453 IPR001678 GO:0008168
Vifa2g03799 514 Gene3D Sun protein; domain 3 170 234 - -
Vifa2g03799 514 CDD AdoMet_MTases 254 342 - -
Vifa2g03799 514 FunFam Methyltransferase NSUN5, putative 235 458 - -
Vifa2g03799 514 PRINTS RNA (C5-cytosine) methyltransferase signature 226 240 IPR023267 GO:0001510
Vifa2g03799 514 PRINTS RNA (C5-cytosine) methyltransferase signature 379 395 IPR023267 GO:0001510
Vifa2g03799 514 PRINTS RNA (C5-cytosine) methyltransferase signature 435 452 IPR023267 GO:0001510
Vifa2g03799 514 PRINTS RNA (C5-cytosine) methyltransferase signature 255 265 IPR023267 GO:0001510
Vifa2g03799 514 PRINTS RNA (C5-cytosine) methyltransferase signature 324 336 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03799 Vifa-Chr2 1113132021 1113135529 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03799 K15264 - gmx:100811850 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03799 2 1113132021 1113135529 Vifa2g03799 2 1113132021 1113135529 ECH