Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03780 ATGGATTCTTCTCAAGGTTCCAAGTTGGCTGGTTTGGTGCAGAATGCCTCCATTACGAGGGATGAATCTAGTTTGGATCGTGTTCCTGTTTATGTTAAGGAGTTGATTGCTGGTGGATTTGCTGGTGCGCTTGCTAAGAGCTCTGTTGCACCTCTAGAACGGGTCAAGATACTCTGGCAGACTAGGACTGGAGGGTTCTATAATCTTGGTGTTTACCACTCTATGAATAAGTTGTTAAAGCATGAAGGGTTTCTTGGATTATACAAAGGAAATGGAGCTAGTGTCATCCGGATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGGTATAAAAGTTGGATCCTTAACAATTACCCCATTTTAGGAACGGGTCCTTCTATTGATCTTTTAGCTGGCTCAGCCGCAGGGGGGACTTCAGTTTTATGTACATACCCCTTAGATCTCGCCCGTACCAAACTTGCTTATCAGGTGGTGGACACAAAAGTATGTATCAAAGATGGTATTAAAGGAGTGCATTCTCAATCTATAGGTCCTGTACATAATGGGATTAAAGGTGTACTTACGAGTGCCTATAAGGAAGCCGGAGTTCGTGGACTTTATAGAGGTGTAGGTCCAACACTAATTGGAATTCTTCCATATGCCGGTTTGAAGTTCTATACTTATGAGAAATTGAAGATGCATGTTCCTGAAGAACATCAGAAGTCCATTTTGATGCGCCTTTCTTGTGGAGCTCTTGCTGGACTGTTTGGGCAGACTTTAACGTACCCTTTGGATGTTGTTAAGCGGCAAATGCAGGTTGGGAGCTTGCAAAATGCAGCTAACGAAGATGCCAAATACAAGAATACATTAGATGGACTTAAGAAGATTGTTCGAAATCAAGGATGGAGGCAGTTGTTTGCTGGTGTGAGCATTAACTACATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATATGACATGGTGAAGGCATGGCTTGATGTACCACCCCAACAAAGGTCTAAATCAGTTTCGGCAGGATAA 1032 0.4264 MDSSQGSKLAGLVQNASITRDESSLDRVPVYVKELIAGGFAGALAKSSVAPLERVKILWQTRTGGFYNLGVYHSMNKLLKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILNNYPILGTGPSIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVVDTKVCIKDGIKGVHSQSIGPVHNGIKGVLTSAYKEAGVRGLYRGVGPTLIGILPYAGLKFYTYEKLKMHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAANEDAKYKNTLDGLKKIVRNQGWRQLFAGVSINYIRIVPSAAISFTTYDMVKAWLDVPPQQRSKSVSAG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03780 343 SUPERFAMILY Mitochondrial carrier 32 324 IPR023395 -
Vifa2g03780 343 Gene3D Mitochondrial carrier domain 28 330 IPR023395 -
Vifa2g03780 343 PRINTS Mitochondrial carrier protein signature 245 267 IPR002067 GO:0055085
Vifa2g03780 343 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Vifa2g03780 343 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Vifa2g03780 343 PRINTS Mitochondrial carrier protein signature 202 220 IPR002067 GO:0055085
Vifa2g03780 343 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Vifa2g03780 343 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Vifa2g03780 343 PRINTS Graves disease carrier protein signature 26 46 IPR002167 GO:0005743
Vifa2g03780 343 PRINTS Graves disease carrier protein signature 291 311 IPR002167 GO:0005743
Vifa2g03780 343 PRINTS Graves disease carrier protein signature 51 71 IPR002167 GO:0005743
Vifa2g03780 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 236 328 IPR018108 -
Vifa2g03780 343 Pfam Mitochondrial carrier protein 31 119 IPR018108 -
Vifa2g03780 343 Pfam Mitochondrial carrier protein 129 230 IPR018108 -
Vifa2g03780 343 Pfam Mitochondrial carrier protein 236 329 IPR018108 -
Vifa2g03780 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 229 IPR018108 -
Vifa2g03780 343 PANTHER SOLUTE CARRIER FAMILY 25 31 331 - -
Vifa2g03780 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 115 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03780 Vifa-Chr2 1107220082 1107225968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03780 25 311 Organic Solute Cotransporters AT4G26180 55.749 1.59e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03780 - - gmx:100784421 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03780 2 1107220082 1107225968 Vifa2g03780 2 1107220082 1107225968 ECH