Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03760 ATGGCGGAAGAACCCCAATACGCCCTAAAACGCAAATACGAAGACCAACCCACCGCCACCGACATCCAACTCGAATTTGAAACTGCCAAACAGCGAGCTCAAGAAGTCGCCGCTCGACTCCTCAGTGTCACCGGCGGCGGTGCTCCTCCACTTTCCTACGATCCTAAACGTTCCAAGTCTGATAACGGTGGTCCGCAATCTGGCTTCGATTCCTACGATTTGAAGCCGCAGTATTCAGCTGGCTCTTATGGTGGTGGTTCTAGTAAGAAGATTGAGATACCTAATGGGAGGGTTGGGGTTCTTATTGGGAAAGGAGGCGAGACTATTAAGTATCTTCAGTTGCAGTCTGGGGCGAAGATTCAGGTTACAAGGGATATGGATGCGGATCCTAATTCTAGTATGAGGATGGTTGAGCTTATGGGGACTTCTGAGGCTGTTGCTTCTGCTGAGAAACTTATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGTTGGTGGTGGTACTAGACGGATGGCTGCACAATCTGGGGGTGATGAGTTTTCAATGCAAATCCCAAACAATAAGGTTGGACTTATAATTGGTAAAGGAGGAGAAACTATTAAGAGTATGCAAGCTTCTACTGGAGCACGGATTCAGGTTATACCTCTGCATCTTCCCCCAGGTGATACATCAACAGAAAGGACATTAAAAATTGATGGGGCCCCTGATCAAATTGAATCAGCAAAGCTATTGGTTAATCAAATCATCACTGGCGAGAATCGTCTTAGAGGTTCAGGGAACTCCGGTGGTTACACTCAGCAAGGCTACCAATCCCGTCCACCATCTAGCTGGGCCCCCCCTGTTGCTCCTGGGCAACAACCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCACAGTATAACATGCCTCAGCCCCCATACTCAGGCTATCCTCCCCAGCAACCTGGAGGGTACCCTGCCAATTGGGACCAGTCCACTGCACCATCTCACCAGCAGTCTGCAAGTGGTTATGATTATTACAATCAACAGCCCCAGCAACAGCAAACTCCGGGGGGTCCTGCTCAGCCAGCTGATGGGTCTGCATACAATTACAGTCAGCCACCTTCCACTGGTTATAGCCAACCAGGACAAGGTTATGGTCAGGAAAGCTATGGTGCGTATAATGCGCCACAACAATCCGGGTATGGTCAGCCCCCAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGCTATGGCAGTGGGAGTAACCCAACACAAGAAGGGCATGCCAACTATGGCTCACAGGCAGATTCGTCCCAAACTTCGCAACCCTCTACTGTTGCCCCGCAAGGCTACGCTACCAATCAACAAGGAACTCCTCAACCAGGTTATGGGGTAGCCCCTACCTCCCAAGCGGCCTATGGAAATCAACCACAATCTGGTTATGGACCTGGTTATGGTGCCCCTCCATCTCAAAAGCCAACTGCAAATCCACCTGTGTATGGTCAATCACAGTCACCTGGCACCGCAGGAAGTTATGGTCAGTCAGCATATCCCCCTACCCAGGCCCCACCTTCTGGGTATGCTCAGCCAGAGTCAGGCACTCAGAGGCCACCAGTGCAACCAGGATACGGTTCTCAATCATATGGTGCTCCTCAAGGTGGCCAGCCTGGCTACAGTCAGACTCCACCATCGTATGGAAACAGTTCTTATGGTGCTGGTTATACTCAGCCTCCCGTGTATGCTAACGATGGGACAGCAGCCGCACAGCCTGTTCAACAGAGTGGTGTTGCTAAAGTGTCCCCCAAAAGTTGA 1818 0.5088 MAEEPQYALKRKYEDQPTATDIQLEFETAKQRAQEVAARLLSVTGGGAPPLSYDPKRSKSDNGGPQSGFDSYDLKPQYSAGSYGGGSSKKIEIPNGRVGVLIGKGGETIKYLQLQSGAKIQVTRDMDADPNSSMRMVELMGTSEAVASAEKLINEVLAEAEAGASVGGGTRRMAAQSGGDEFSMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHLPPGDTSTERTLKIDGAPDQIESAKLLVNQIITGENRLRGSGNSGGYTQQGYQSRPPSSWAPPVAPGQQPGYGYGQPGSYSGPSPQYNMPQPPYSGYPPQQPGGYPANWDQSTAPSHQQSASGYDYYNQQPQQQQTPGGPAQPADGSAYNYSQPPSTGYSQPGQGYGQESYGAYNAPQQSGYGQPPTYDQQQGYGSAPSYGSGSNPTQEGHANYGSQADSSQTSQPSTVAPQGYATNQQGTPQPGYGVAPTSQAAYGNQPQSGYGPGYGAPPSQKPTANPPVYGQSQSPGTAGSYGQSAYPPTQAPPSGYAQPESGTQRPPVQPGYGSQSYGAPQGGQPGYSQTPPSYGNSSYGAGYTQPPVYANDGTAAAQPVQQSGVAKVSPKS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03760 605 MobiDBLite consensus disorder prediction 324 479 - -
Vifa2g03760 605 MobiDBLite consensus disorder prediction 498 577 - -
Vifa2g03760 605 ProSiteProfiles Type-1 KH domain profile. 86 153 - -
Vifa2g03760 605 SMART kh_6 178 252 IPR004087 GO:0003676
Vifa2g03760 605 SMART kh_6 85 158 IPR004087 GO:0003676
Vifa2g03760 605 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 83 162 IPR036612 GO:0003723
Vifa2g03760 605 MobiDBLite consensus disorder prediction 588 605 - -
Vifa2g03760 605 MobiDBLite consensus disorder prediction 255 605 - -
Vifa2g03760 605 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 77 419 - -
Vifa2g03760 605 MobiDBLite consensus disorder prediction 305 319 - -
Vifa2g03760 605 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 183 297 IPR036612 GO:0003723
Vifa2g03760 605 ProSiteProfiles Type-1 KH domain profile. 179 247 - -
Vifa2g03760 605 MobiDBLite consensus disorder prediction 255 276 - -
Vifa2g03760 605 Gene3D K Homology domain, type 1 80 176 IPR036612 GO:0003723
Vifa2g03760 605 Gene3D K Homology domain, type 1 177 275 IPR036612 GO:0003723
Vifa2g03760 605 Pfam KH domain 89 155 IPR004088 GO:0003723
Vifa2g03760 605 Pfam KH domain 183 248 IPR004088 GO:0003723
Vifa2g03760 605 CDD KH-I 89 154 - -
Vifa2g03760 605 FunFam KH domain-containing protein 176 275 - -
Vifa2g03760 605 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03760 Vifa-Chr2 1101970445 1101973895 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03760 K13210 - gmx:100813135 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03760 2 1101970445 1101973895 Vifa2g03760 2 1101970445 1101973895 ECH