Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03744 ATGATTCAAAGAACTCTCAACTTTCAAAGTTTAAGAAAATTTCTTCTTCAACCTGGTTATTATCTCTCTTCTTCCAAGATAGGAGCTTACAATGGGTACACATCTCAACCCTCACCTCTTCCAATTCCAAGTGATGAAGAAGAGTATGCTAATGTGGATTGGGACAGTCTTGGATTTGGATTAATGCCAACTGATTTTATGTATGTAACAAAATGTGATGCGGGCCAAAGTTTTGGAGATGGGCAGATGAATCGGTATGGGAACATTGAACTTAGTCCATCAGCAGGGGTCCTAAATTATGGCCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGAAGCTGCTGCTCTTCCGGCCAGAAGAAAATGCAATTCGCATGAAGATTGGTGCTGAAAGAATGTGCATGATACCTCCTTCCATTGATCAATTTGTTGATGCTCTGAAACGAACCGTTGTCGCAAATAAGCGTTGGGTTCCTCCACCGGGCAAAGGATCGTTGTACCTTAGGCCATTGCTCATAGGAAGTGGTCCGGTTCTTGGTTTGGCTCCTGCACCTGAATACACATTCCTCATATATGCTTCCCCGGTTCGCAACTATTTCAAGGAAGGTTCGGCTCCGCTCAACTTGTACGTAGAAGAGGATTTCGACCGTGCCTCTCGTCGTGGCACCGGAAGCGTTAAAACCATTTCCAACTATGCACCTGTCTTGATGGCACAAAATAGAGCCAAGAGCCGAGGATTTTCGGATGTGTTATACCTCGATTCAGACAGAAAGAAAAACCTGGAGGAGGTCTCTTCTTGTAACATTTTTATCGCCAAGGGAAAAAGGATTTCAACACCTGCTATCAATGGAACCATACTGTCAGGAATCACTAGAAAAAGTGTCATCGAAATCGCTACTGATTTGGGTTATCAGGTGGAAGAGCGCGTTGTTGCGGTCGAAGAATTGACGGAGGCCGATGAAGTTTTCTGTACAGGAACTGCTGTTGGTGTTGCTCCTGTAGGGAGTATCACATACAGGAATACAAGGGTGGACTATAAAACAGGTTCTGGTTCCATTTGTGAAGAGCTGTGCAAAACAATTTTAGGAATACAAACTGGTAGTATTGAAGATAAGAAGGGATGGATTGTTGAATTTGATTAA 1155 0.4329 MIQRTLNFQSLRKFLLQPGYYLSSSKIGAYNGYTSQPSPLPIPSDEEEYANVDWDSLGFGLMPTDFMYVTKCDAGQSFGDGQMNRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGKLLLFRPEENAIRMKIGAERMCMIPPSIDQFVDALKRTVVANKRWVPPPGKGSLYLRPLLIGSGPVLGLAPAPEYTFLIYASPVRNYFKEGSAPLNLYVEEDFDRASRRGTGSVKTISNYAPVLMAQNRAKSRGFSDVLYLDSDRKKNLEEVSSCNIFIAKGKRISTPAINGTILSGITRKSVIEIATDLGYQVEERVVAVEELTEADEVFCTGTAVGVAPVGSITYRNTRVDYKTGSGSICEELCKTILGIQTGSIEDKKGWIVEFD 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03744 384 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 47 380 IPR036038 GO:0003824
Vifa2g03744 384 CDD BCAT_beta_family 90 371 IPR033939 GO:0004084|GO:0009081
Vifa2g03744 384 PIRSF BCAT1 37 384 IPR005786 GO:0004084|GO:0009081
Vifa2g03744 384 PANTHER AMINO ACID AMINOTRANSFERASE 40 382 IPR005786 GO:0004084|GO:0009081
Vifa2g03744 384 FunFam Branched-chain-amino-acid aminotransferase 36 210 - -
Vifa2g03744 384 Gene3D - 33 211 IPR043131 -
Vifa2g03744 384 Pfam Amino-transferase class IV 103 341 IPR001544 GO:0003824
Vifa2g03744 384 ProSitePatterns Aminotransferases class-IV signature. 267 296 IPR018300 GO:0003824
Vifa2g03744 384 Gene3D - 212 383 IPR043132 -
Vifa2g03744 384 NCBIfam branched-chain-amino-acid transaminase 80 382 IPR005786 GO:0004084|GO:0009081
Vifa2g03744 384 FunFam Branched-chain-amino-acid aminotransferase 212 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03744 Vifa-Chr2 1096652408 1096655386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03744 K00826 - gmx:100782644 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03744 2 1096652408 1096655386 Vifa2g03744 2 1096652408 1096655386 ECH