LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03738	ATGTTGTCTAGGAAGGCTAGTGAGGATTCTCATGGGCAAGACTCTAGTTACTTTTTAGGATGGCAAGAATATGAGAAGAATCCATATCATCCCATTCATAATCCCACTGGAATCATTCAGATGGGACTTGCCGAAAATCAGCTTTCATTTGACATTGTTGAATCATGGCTTGAAAGAAATTCTGATACATTGGAGATGAAAAAAGATGGAATGTCTGTATTTAGAGAACTCGCTCTATGCCAAGATTATCACGGCTTACCTGCTTTCAAAAATGAACTTGTGGAGTTTATGGCAAAAATAAGAGGAAATGAAATTAAATTTGATCCAAAGAATCTTGTCCTCACAGCTGGAGCAACTTCTGCAAACGAGATTCTCATGTTTTGTCTTGCTAATCCTGGAGAAGCTTTCATTCTTCCAACACCTTATTATCCAGGGTTCGATAGAGATCTTAAATGGCGCACTGGAGTTGAAATTGTTCCAATGCATTGTTCGAGTTTAAATGGTTTCAAAATCACCTCGTCTGCTTTAGAACAAGCCTGTCAACATGCGAAAAACTTGAACCTCAAGGTCAAGGGTGTACTAGTAACTAACCCTTCAAATCCACTAGGCACAACCATGACCAAAACTGAACTTAACCATCTAGTCACCTTTGCAATAGACAAAAATATCCACATAATAAGTGACGAAATTTACTCGGGTACCGTCTTCGATTCACCAAAATTCGTAAGTATCATGGAAGTTATAAATGAAAGAAGCTTAAAAAACGATGAAATTTCAAAGCGTGTCCACATTGTTTATAGTTTGTCAAAAGATTTAGGTGTGCCTGGTTTTCGTGTGGGAATGATATATTCAAATAACGAAAAGGTTGTATCCACGGCTACCAAAATGTCAAGTTTTGGACTTATTTCGTCACAAACTCAATATTTGCTAGCAAAATTACTTGGTGACAAGAAATTTACTTTTGATTATATGGAAGTGAACAAAACAAGGTTGAAGAAACAAAAGGAAATAATTGAAAGTGGTTTGAAAAACGCGGGAATTCAGTGTTTAAAGAGCAATGCTGGACTATTTTGTTGGGTTGATATGAAACACTTATTGAGTTATGCAACTTTTGAAGCGGAGAAAGAACTTTGGAAAATGATTCTTTATCGAGTTGGTTTGAATATATCTCCGGGATCTTCTTGTCATTGTTCTGAACCGGGATGGTTTAGGATTTGCTTTGCGAATATGTCTCAAGAAACTTTAAAAGTTGCGATGAGAAGGATTAAGGTTTTTATAGATTCAAATTCAACAATGATTTCTATCAAACAATCATTTGTTAATAATGCCAATTATTATATCACTAGAAGAGAAATTACCAATTAG	1365	0.3568	MLSRKASEDSHGQDSSYFLGWQEYEKNPYHPIHNPTGIIQMGLAENQLSFDIVESWLERNSDTLEMKKDGMSVFRELALCQDYHGLPAFKNELVEFMAKIRGNEIKFDPKNLVLTAGATSANEILMFCLANPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSLNGFKITSSALEQACQHAKNLNLKVKGVLVTNPSNPLGTTMTKTELNHLVTFAIDKNIHIISDEIYSGTVFDSPKFVSIMEVINERSLKNDEISKRVHIVYSLSKDLGVPGFRVGMIYSNNEKVVSTATKMSSFGLISSQTQYLLAKLLGDKKFTFDYMEVNKTRLKKQKEIIESGLKNAGIQCLKSNAGLFCWVDMKHLLSYATFEAEKELWKMILYRVGLNISPGSSCHCSEPGWFRICFANMSQETLKVAMRRIKVFIDSNSTMISIKQSFVNNANYYITRREITN	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g03738	454	Gene3D	Aspartate Aminotransferase, domain 1	27	421	IPR015422	GO:0003824
	Vifa2g03738	454	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	293	316	-	-
	Vifa2g03738	454	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	41	67	-	-
	Vifa2g03738	454	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	74	90	-	-
	Vifa2g03738	454	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	223	246	-	-
	Vifa2g03738	454	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	261	285	-	-
	Vifa2g03738	454	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	133	154	-	-
	Vifa2g03738	454	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	187	211	-	-
	Vifa2g03738	454	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	111	131	-	-
	Vifa2g03738	454	Pfam	Aminotransferase class I and II	39	422	IPR004839	GO:0009058\|GO:0030170
	Vifa2g03738	454	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	3	424	-	-
	Vifa2g03738	454	FunFam	1-aminocyclopropane-1-carboxylate synthase 3	61	316	-	-
	Vifa2g03738	454	SUPERFAMILY	PLP-dependent transferases	9	426	IPR015424	-
	Vifa2g03738	454	CDD	AAT_like	81	423	-	-
	Vifa2g03738	454	Gene3D	-	61	316	IPR015421	GO:0003824
	Vifa2g03738	454	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	267	280	IPR004838	GO:0003824\|GO:0009058\|GO:0030170

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03738	Vifa-Chr2	1095315640	1095317741	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03738	K01762		-	gmx:100803507	704.901

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g03738	2	1095315640	1095317741	Vifa2g03738	2	1095315640	1095317741	ECH