Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03706 ATGTCTTCATGGCTCGCTCGTTCTCTCGCAAACTCTCTCCGATTCGACGATGACGGTAACATTGAAAACGACGTCGTAACCGACCCTCCAACAACGTCCCCCAGAATTTCCCCTCAACAAAATGAATCACAAGATAATGCAATAATTGAATCACAATTACAACATCACGATGAAGATGATGATGATGAAACGCAAGGTCGTGGTGTTAAAGAAGACCTCGACGAAATCAAACAAACCCTAACTCGTCAATTTTGGGGAATGGCTTCGTTTCTCGCTCCTCCCCCAACGACTTCTCAATCCGATCACTCTTTCTCTGACAAACGACAACAACAACAACAAGAGAATGAACATCAACCACAATTTGATGAGGCTGTGATTTTTAATCAATCTTTGGATATGGAACAAGGTGCGCTCCGTGAGGATGATCCTGACCCGAATTCGAATACATTTGGATCCGATTCAGAAGGTGGCCGGGAGCCGGAGTTTGATATCCCGTCTGCAGTTGGAATTACGGAGGAGGTGTTGACGTTTGCTTTGAATATCGCTATGCATCCCGAGACGTGGTTGGATTTTCCTATTGATGAGGAAGATGATACCAATGATTTTTACATGTCTGAAGCCCAACAAGAGCATGCTTTGGTCGTTGAAAGACTTGCTCCGAGATTAGCTGCACTCAGAATTGAACTGTGTCCTTGTCATATGAGTGAAAGTTACTTCTGGAAAGTCTATTTTGTGCTTTTGCATTCGAGGCTTGATAAGCAAGATTCAGAGATTTTGTCTACACCCCAGGTCATGGAAGCCAGAGCGACATGGATGCAGGAATTGCACAAACAAACAAAGCCTGAATTTGATATTTTCGGAAGAAATGATCTCTACTCAAGAGAAAATGTTCAGCATCATGATTCTACTCCCAGCTTATCAGATGACACATATTCTGATGACATGCCTCACCAGGCATACGGATATAGAACAGACTATTTGTTTGTGAGGGCAGATAATGAGTCTGAGAAGCACACAATCGAAAGTTCTGGATCACATTTCTCTGATAAGTCAGTTATTGAAGAAAATCCAATTATTAAAAATGAAAACAAGGATCTAAGAAGTGGTCGACGGTCTCAAATTATCATTCAAGACTATGGTGATGATGACGATGATGATTGGCCAGAGGATGATTCTGACTTAGGGGGATATGGTGGAGCAGCACTCCCTATTGTCAATGAAGAAGACATATCTTTCAGCGATCTAGAGGATGATGATTTTGGCATTAAACATGTTAGTGCCAATCCAGATTCAAAGGTGGTATGA 1305 0.4215 MSSWLARSLANSLRFDDDGNIENDVVTDPPTTSPRISPQQNESQDNAIIESQLQHHDEDDDDETQGRGVKEDLDEIKQTLTRQFWGMASFLAPPPTTSQSDHSFSDKRQQQQQENEHQPQFDEAVIFNQSLDMEQGALREDDPDPNSNTFGSDSEGGREPEFDIPSAVGITEEVLTFALNIAMHPETWLDFPIDEEDDTNDFYMSEAQQEHALVVERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLDKQDSEILSTPQVMEARATWMQELHKQTKPEFDIFGRNDLYSRENVQHHDSTPSLSDDTYSDDMPHQAYGYRTDYLFVRADNESEKHTIESSGSHFSDKSVIEENPIIKNENKDLRSGRRSQIIIQDYGDDDDDDWPEDDSDLGGYGGAALPIVNEEDISFSDLEDDDFGIKHVSANPDSKVV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03706 434 MobiDBLite consensus disorder prediction 89 120 - -
Vifa2g03706 434 Gene3D BSD domain 168 261 IPR035925 -
Vifa2g03706 434 MobiDBLite consensus disorder prediction 137 163 - -
Vifa2g03706 434 MobiDBLite consensus disorder prediction 51 68 - -
Vifa2g03706 434 SUPERFAMILY BSD domain-like 169 255 IPR035925 -
Vifa2g03706 434 ProSiteProfiles BSD domain profile. 199 251 IPR005607 -
Vifa2g03706 434 Pfam BSD domain 199 255 IPR005607 -
Vifa2g03706 434 MobiDBLite consensus disorder prediction 378 400 - -
Vifa2g03706 434 MobiDBLite consensus disorder prediction 12 68 - -
Vifa2g03706 434 MobiDBLite consensus disorder prediction 25 50 - -
Vifa2g03706 434 PANTHER BSD DOMAIN-CONTAINING PROTEIN 3 420 - -
Vifa2g03706 434 SMART wurzfinal6 199 251 IPR005607 -
Vifa2g03706 434 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03706 Vifa-Chr2 1083524393 1083528030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03706 169 249 EF-hand Containing Proteins AT1G69030 31.868 1.28e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03706 - - lja:Lj1g3v1755620.1 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03706 2 1083524393 1083528030 Vifa2g03706 2 1083524393 1083528030 ECH