Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03686 ATGGATACGTGGAAGAACATCAGAGACAGAGAATCCGGAAAATCGCGTCCACAATCCTTCGCTAACCGCATAAAATCCAATCGCATTTCACATCTCCAGTTATCAAATCACAAAGAACTCATTTCCCCTCACAAAGGCGCAATCAATTCCCTTCAGATTGATTTGACAGAGGGAAGATATCTCTTATCTTCTGCATCTGATGCATCGGTAGCGGTTTTCGACGTGCAACGGCCGAGTGAATGCAACGCTATATGGTATCCCATTGATACTGGATTGTTCGTTACTGGTTCATATGATCATTATGTTAATGTTTGGGACACTAACACCACTCAGGTTGTGGTGAATTTTAAAATGCCTGGTAAGGTGTATAAGACTGCGATGTCTACATTGTCCACGTCTCATATGCTTATTGCAGTTGGAACTGAGGATGTACAAGTTCGGCTTTGTGATATTGCTTCGGGGGCATTTGCTCATACTTTGTCTGGTCATCGAGATGGTGTAATGACTGTTGAATGGTCTGCTTCAAGTGAATGGGTCTTGATTACTGGGGGGTGTGATGGCGCCATACGTTTTTGGGACATAAGGCGTGCTGGTTGTTTCCAAGTTTTAAATCAATCTCGTACACAGCTTGGAAGACGTCCACCAATACTCAAACGTTCTTCCATAACTAAGGAATCAAGTACAAAAATGCGTGCTGCACAGAAGAAATTTGTCAATGGCAGTGGCAGTGGACAACTGCCAATTGGCAGGCTATCATCTAGGGGACCCATGAAGCAGAAATTACATCCAGGAATGATTTCTACTCAGGATCGTGCAACTGCTCACTATGGTGCTGTGACAGGATTGAAAGTAACAGAGGATGGCATGTATCTCTTAAGTGCAGGGTCTGATTCAAGATTGAGGTTGTGGGATATTGAGTCAGGTTGCGACACTCTTGTGAACTTTGAAACAGTCCGCTTGCAAACAAGCAAACCTATTCAATTCGCTACAACTCAAGACTCGGCCGTTGTTTTTGTTCCATGCATGAGAGTTGTGAAAGCATTTGATATGTGGTCTGGGAACGCACACACGATACTACGTGGACACTATGAATCTGTAAACGCCTGCTGGTTTAATCTGCATGATCAGGAGTTGTACACAGGTGGAAACGATAGACAAATTCTTGTATGGTCACCTGCTAGGTTAATTGCAGATGAAATGGGCGAAGGAGATCCCGACGATCAGGATAACTGGAGTAACTGA 1242 0.4388 MDTWKNIRDRESGKSRPQSFANRIKSNRISHLQLSNHKELISPHKGAINSLQIDLTEGRYLLSSASDASVAVFDVQRPSECNAIWYPIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPGKVYKTAMSTLSTSHMLIAVGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMRAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLHPGMISTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDIESGCDTLVNFETVRLQTSKPIQFATTQDSAVVFVPCMRVVKAFDMWSGNAHTILRGHYESVNACWFNLHDQELYTGGNDRQILVWSPARLIADEMGEGDPDDQDNWSN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03686 413 ProSitePatterns Trp-Asp (WD) repeats signature. 291 305 IPR019775 -
Vifa2g03686 413 PRINTS G protein beta WD-40 repeat signature 93 107 IPR020472 -
Vifa2g03686 413 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Vifa2g03686 413 PRINTS G protein beta WD-40 repeat signature 291 305 IPR020472 -
Vifa2g03686 413 Pfam WD domain, G-beta repeat 357 391 IPR001680 GO:0005515
Vifa2g03686 413 Pfam WD domain, G-beta repeat 273 304 IPR001680 GO:0005515
Vifa2g03686 413 Pfam WD domain, G-beta repeat 158 193 IPR001680 GO:0005515
Vifa2g03686 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 308 - -
Vifa2g03686 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 391 - -
Vifa2g03686 413 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 80 IPR042238 GO:0006283
Vifa2g03686 413 SUPERFAMILY WD40 repeat-like 41 392 IPR036322 GO:0005515
Vifa2g03686 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 391 IPR001680 GO:0005515
Vifa2g03686 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Vifa2g03686 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 160 195 - -
Vifa2g03686 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 115 IPR001680 GO:0005515
Vifa2g03686 413 SMART WD40_4 78 106 IPR001680 GO:0005515
Vifa2g03686 413 SMART WD40_4 153 193 IPR001680 GO:0005515
Vifa2g03686 413 SMART WD40_4 33 74 IPR001680 GO:0005515
Vifa2g03686 413 SMART WD40_4 262 304 IPR001680 GO:0005515
Vifa2g03686 413 SMART WD40_4 352 391 IPR001680 GO:0005515
Vifa2g03686 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 202 IPR001680 GO:0005515
Vifa2g03686 413 ProSitePatterns Trp-Asp (WD) repeats signature. 180 194 IPR019775 -
Vifa2g03686 413 Gene3D - 4 394 IPR015943 GO:0005515
Vifa2g03686 413 FunFam Excision repair cross-complementation group 8 252 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03686 Vifa-Chr2 1079665796 1079671157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03686 133 308 Miscellaneous Gene Families AT5G08390 23.864 6.34e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03686 K10570 - gmx:100815581 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03686 2 1079665796 1079671157 Vifa2g03686 2 1079665796 1079671157 ECH