Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03601 ATGGGTGGCGCTCACAGTCGCGACGAACTTCTCGACAGTTCTGACTCAGAATACGAAGAAAGTGAAAACGAAAACGAAGCAAGTTACGAAGATGCAAACGAAGGAAGTTCAGAGGGAAGAGTCAAAACTCCATCGTCAATCGATGATGTTGACGCTAAACTCAAAGCGCTCAAGCTTAAATACTCTTCTAAGAACCCAAACCCAAACCCTAACAATGTTAAGCTTTATCTTCATAACTCTGTTGAGTCCAAATGGGTGATTTATGAGAAATTAACGACTTACTCGTTTGTTAAAAGTTGTAGTGTTGAGGGAGAGAGTGATGAAGACGAGGAAAATGAGGACGGTGAGAAAGGTTTCTGGGTTTTGAAAGTTGGGTCTAAGATTAGGTCAAAAGTGGGGGCGGAAATGCAGTTGAAAACGCTGGTTGATCAGCGGAGAGTGGATTTTATTGCGAAGGGGGTTTGGGCTATGAGATTCTTTACGGAGCAGCATTATGAGGCGTTTTTGGTTCGGTATCAGAATTGTACGTTTGAGAATACGTATGGGTTTGAGGCAATTGATGAGAACAAGCTTAAGGTTTATGGGAAGGATTTTATTGGGTGGGCGAATCCGGAAGCCGCGGATGATTCTATGTGGGAGGATGCTGATGATAGTTTCTCCAAGAGTCCGGCGTCTGCTACCCCAGTTAGAGCGAGTCAGGATTTGACGGAGGAGTTTGAGGAGGCGGCGAATGGTGGGATTCAGAGTCTTGCGTTGGGTGCTCTGGAAAATAGTTTCCTTGTCGGTGAAAATGGGATTCAGGTGGTGAAGAATTTCGCGCATGGTATTCACGGGAAAGGTGCTTTTGTGAATTTTGGGGGTGGTTCAGCATCGGCTTCGAAGATGGTGCAATCTACTCCCAAGAAGACGCTTCTCATGAAAGCTGAAACCAGCATGCTTCTGATGAGTCCATTGAATGAAAGTAAGCTGCGTTCGACCGGGCTTCATCAGTTTGATATTGAGACGGGGAAGGTTGTGACGGAATGGAAATTTGGTAAGGATGGTACTGAGATTACAATGAGAGATATCACGAATGATAGTAAGAGTTCTCAGTTAGATCCTTCGGGTTCTACTTTTCTTGGATTGGATGATAACAGGCTTTGTAGGTGGGATATGCGTGACCGTCATGGAATAGTTCAGGATCTTGCTGGTTCTAACTCTAATATGAGTACACCTGTGTTGAATTGGGATCAAGGTCATCAGTTTTCCAGGGGGACAAACTTTCAGTGCTTCGCTACAACTGGTGATGGTTCTGTTGTCGTTGGTTCACTAGATGGGAAGATTAGGCTGTATTCAATTAACTCTATGAGGCAGGCGAAAACCGCATTTCCTGGACTTGGCTCGCCGGTTACTCATGTGGATGTTACTTTTGATGGAAAGTGGATTGTGGGAACAACAGATACTTACTTGGTTGTTATTTGTACTCTCTTTACTGATAAAGATGGAAACAGTAAAACTGGTTTTGCTGGAAGAATGGGAAATAGGATTGCTGCTCCAAGGTTACTCAAGCTCAACCCTCTCGACTCACATTTAGCTGGAGTCAATAACAAATTCCACAGTGCTCAGTTTTCTTGGGTGACAGAGAATGGGAGGCAGGAGCGGCACATAGTAGCTACAGTGGGGAAGTTTAGTGTGATATGGAACTTCCAACAGGTCAAGGATGGTTCTCATGAGTGCTACCGCAGCCAACAGGGTCTAAAGAGCTGCTACTGCTACAAGATAGTTCTCAGGGATGATTCCATTGTTGAGAGTCGATTCATGCACGACAAGTTTGCAGTAACTGATTCTCCTGAAGCTCCCTTGGTTATAGCCACACCAATGAAAGTTAGTTCGTTCAGCTTATCCAACAGGCGATAA 1896 0.4462 MGGAHSRDELLDSSDSEYEESENENEASYEDANEGSSEGRVKTPSSIDDVDAKLKALKLKYSSKNPNPNPNNVKLYLHNSVESKWVIYEKLTTYSFVKSCSVEGESDEDEENEDGEKGFWVLKVGSKIRSKVGAEMQLKTLVDQRRVDFIAKGVWAMRFFTEQHYEAFLVRYQNCTFENTYGFEAIDENKLKVYGKDFIGWANPEAADDSMWEDADDSFSKSPASATPVRASQDLTEEFEEAANGGIQSLALGALENSFLVGENGIQVVKNFAHGIHGKGAFVNFGGGSASASKMVQSTPKKTLLMKAETSMLLMSPLNESKLRSTGLHQFDIETGKVVTEWKFGKDGTEITMRDITNDSKSSQLDPSGSTFLGLDDNRLCRWDMRDRHGIVQDLAGSNSNMSTPVLNWDQGHQFSRGTNFQCFATTGDGSVVVGSLDGKIRLYSINSMRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDTYLVVICTLFTDKDGNSKTGFAGRMGNRIAAPRLLKLNPLDSHLAGVNNKFHSAQFSWVTENGRQERHIVATVGKFSVIWNFQQVKDGSHECYRSQQGLKSCYCYKIVLRDDSIVESRFMHDKFAVTDSPEAPLVIATPMKVSSFSLSNRR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03601 631 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 1 629 IPR040458 -
Vifa2g03601 631 SUPERFAMILY Putative isomerase YbhE 326 529 - -
Vifa2g03601 631 Pfam VID27 C-terminal WD40-like domain 291 574 IPR013863 -
Vifa2g03601 631 MobiDBLite consensus disorder prediction 1 47 - -
Vifa2g03601 631 Gene3D - 311 578 IPR015943 GO:0005515
Vifa2g03601 631 MobiDBLite consensus disorder prediction 13 31 - -
Vifa2g03601 631 FunFam Vacuolar import/degradation Vid27-related protein 310 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03601 Vifa-Chr2 1045544662 1045547614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03601 49 631 Acyl Lipid Metabolism Gene Families AT3G19240 65.546 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03601 - - cave:132185778 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03601 2 1045544662 1045547614 Vifa2g03601 2 1045544662 1045547614 ECH