LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03599	ATGGAGGATGTTCAAGACAAGTTACCCTCTGACTCCTCTACAAAAATTGCTGAAGAGACATCACTGTCCAAACACGTTGAAGACTTGTTGCCCTCTGAATCTTCTTCAAAAATGACTGAAGAGACACTTATGGAAGAACACGTTGCAAACAAGCTACCCTCGGACTCTACAAAAATTTATGAAGAGACACCACTAGCAGAACATGTTGAAGATATGCTGCCCTCTCAATCTTCTTCAAAAATGACTGAAGAGACACATGCGGAAGAACATGTTGAAGACAAGCTACTCTCTGACTCCTCTACAAAAATTGCTGAAGAGACACCACTGGCAGAACATGTTGAAGACGTGCTGCCTTCTGAATTTTCTTCAAAAAATGCTGAAGAGGTACATTTGGAAGAAGGCGTTGACGACAAGCTACCCTCTGAAACCTCTTCAAAAATTTCTGAAGTGACACCAGTGGCAGAACATGTTGAAGACAATCTACTCTTTAATGGCTCTACAGATATTACTGAGACACCACTTACGGAGCCACTTACGGAGCCCTCTGAAGAAAATACTGTAGTGATAAACCTACCATATAATCAATCTTCCACAGAAATTCCAATTAGTAATGGAGAAGTGAATTCTGGCTCTCACTTAACAGTGCATGAGTTCCCAAAGTTATCAGTGTTGTCAGATGCTTCTGATGGTCACACTATAATACCGGACGAAGATGTTTCTGTAGCTAATTCAGCTTCAATTCCAAATGACAAGGTGGATTTAACAGAAAGAAGCGGCCAGCTAACGTTGGTTGAAGATTCTGGACCAGGTGCTACAGAAGATATCTCTGACAGGCATGAATTGCAGGTTGATGTTACTAATGCTGCTGCTGATAATGAGATTAGACTTTCTGCTTCTTCTGAAACAAATGATTTTTTAAATGATCACAATCAAGTAAAGGTGGCTGTTGGAGCAGTTGACTCACCCTCTCAAACCAAGATGGTTAATATAAAAAGAGGCCTTATTGATACCACACCTCCATTTGAATCTGTCAAGGAAGCTGTTTCTAAGTTTGGAGGAATTGTGGACTGGAAGGCTCATAGAATCCAGACCGTGGAGAGGCGCACTCTAGTTGAACAGGAACTTGATAAAGCAAATGAGGAGATCCCAGAATACAAAAAACAAGCAGAAGCGGCTGAACAGACAAAAGTCCAAGTACTAAAAGAGCTGGACAGCACAAAGAGACTTATAGAAGAGTTAAAGCTTAACCTAGAGAGGGCACAAACCGAGGAGCATCAGGCAAGACAGGACTCGGAACTTGCAAAGCTTAGAGTGGAAGAGATGGAGCAAGGTATTGCAGACGAATCTAGTGTTGCAGCCAAGGCACAACTTGAGGTTGCTAAAGCTAGGTATACAGCAGCCATTTCAGATTTAGCAGCTGTGAAAGAGGAGCTAGAAGCATTGCGCAAGGAATATGCTTCCTTAGTGACTGATAGAGATGAAGCTATTAAGAAAGCCGAGGAGGCAGTTGCAGCATCCAAGGAAGTAGAGAAGTCAGTGGAAGATTTAACTATTGAATTAATCGCCACTAAAGAGTCATTGGAGACTGCTCATGCCGCACACTTGGAAGCAGAGGAACATAGAATAGGAACAGTCATGGCAAGAGATCAAGATTCTCTCAATTGGGAAAAGGAACTTAAACAGGCAGAAGAGGAGCTCCAGAGAATCAATGGGCAAATGTTGTCTGCAAAGGATCTCAAATCCAAACTAGAAACAGCCTCTGGTTTGCTGCTTGATTTGAAAGCTAAATTAACTGCTTATATGGAATCAAAGTTAAAGCAAGAAAGTGATGAAGAGCTTTCACAAGGAGGCCTAGAAGAACCAGGAAAGAAGACACACACTGAAATACAAGCAGCTGTGGAATCAGCCAGAAAGGAACTTGAGGAGGTAAAACTTAACATAGAGAAAGCAAATACGGAGGTTATTTGCTTGAAGCTAGCTGCTACATCTCTAAAATCAGAACTGCAACAAGAAAAATCAAGTCTTGCCTCCATCAAGCAAAGAGAAGGAATGGCCTCCATTGCAGTTGCATCTCTAGAAGCTGAGTTGGATAAGACTAGATCAGAAATAGCTTTGGTACAGATGAAGGAGAGAGAAGCCAAAGAGCAAATGGCTGAACTTCCAAAGAAGCTACAACTAACAGCTGAAGAGGCTAATCAGGCCAACTTGCTTGCTCAAGCAGCCCGTGAAGAACTGCAGAAAATAAATGCAGAAGCAGAACAGGCCAAGGCTGGAGTAAGTACCTTGGAAAGCAGGTTACTTGCTGCTCAAAAGGAGATAGAGGCTGCAAAGGCTTCTGAAAAGTTGGCAATAGCAGCAATTAAAGCATTGCAAGAGAGTGAGTCAAATAGAAGCAAAAATGAAATGGACCCTTCCAGTGGGGTAACACTTTCTTTGGATGAGTACTATGAGCTTAGCAAACGAGCTCACGAGGCAGAAGAGCGAGCCAATATGAGGGTTGCTGCTGCTAATTCTGATGTTGAGAAAGCGAAGGACTCTGAATTGAAATCCTTCGAGAAGTTGGATGAAGTGAATAGAGAGATGGCTGCTAGAAGGGAATCCTTGAAGATGGCAATGGAAAAAGCTGAGAAGGCAAAGGAAGGTAAATTAGGTGTAGAACAAGAACTAAGAAAGTGGAGGGCTGAAAATGAGCAACGGAGAAAGGCTGGCGAGTCTGGTCAAGGAGTAGTTGACCAGAACAAAAGCCCTAGAGCTAGTTTTGAGGGGAGTAAGGAAGCAAATAATTTTGACCGATCCCGAAACACATCAAGTCCGAAGGCTGATATGCATGCAGAAAATGATGAAGGTGGATCGTCACCGGAATCAAAACACGGAAAAAAGAAGAAATCTATGTTCCCACGAGTTTTGATGTTCTTTGCTAGAAGAAAAAAACATTCAAACAAGTCAGGGTAA	2952	0.4234	MEDVQDKLPSDSSTKIAEETSLSKHVEDLLPSESSSKMTEETLMEEHVANKLPSDSTKIYEETPLAEHVEDMLPSQSSSKMTEETHAEEHVEDKLLSDSSTKIAEETPLAEHVEDVLPSEFSSKNAEEVHLEEGVDDKLPSETSSKISEVTPVAEHVEDNLLFNGSTDITETPLTEPLTEPSEENTVVINLPYNQSSTEIPISNGEVNSGSHLTVHEFPKLSVLSDASDGHTIIPDEDVSVANSASIPNDKVDLTERSGQLTLVEDSGPGATEDISDRHELQVDVTNAAADNEIRLSASSETNDFLNDHNQVKVAVGAVDSPSQTKMVNIKRGLIDTTPPFESVKEAVSKFGGIVDWKAHRIQTVERRTLVEQELDKANEEIPEYKKQAEAAEQTKVQVLKELDSTKRLIEELKLNLERAQTEEHQARQDSELAKLRVEEMEQGIADESSVAAKAQLEVAKARYTAAISDLAAVKEELEALRKEYASLVTDRDEAIKKAEEAVAASKEVEKSVEDLTIELIATKESLETAHAAHLEAEEHRIGTVMARDQDSLNWEKELKQAEEELQRINGQMLSAKDLKSKLETASGLLLDLKAKLTAYMESKLKQESDEELSQGGLEEPGKKTHTEIQAAVESARKELEEVKLNIEKANTEVICLKLAATSLKSELQQEKSSLASIKQREGMASIAVASLEAELDKTRSEIALVQMKEREAKEQMAELPKKLQLTAEEANQANLLAQAAREELQKINAEAEQAKAGVSTLESRLLAAQKEIEAAKASEKLAIAAIKALQESESNRSKNEMDPSSGVTLSLDEYYELSKRAHEAEERANMRVAAANSDVEKAKDSELKSFEKLDEVNREMAARRESLKMAMEKAEKAKEGKLGVEQELRKWRAENEQRRKAGESGQGVVDQNKSPRASFEGSKEANNFDRSRNTSSPKADMHAENDEGGSSPESKHGKKKKSMFPRVLMFFARRKKHSNKSG	983

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g03599	983	Coils	Coil	464	519	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	1	145	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	125	143	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	606	626	-	-
	Vifa2g03599	983	Coils	Coil	626	681	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	82	113	-	-
	Vifa2g03599	983	Coils	Coil	552	596	-	-
	Vifa2g03599	983	Coils	Coil	854	895	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	936	959	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	868	983	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	1	26	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	868	904	-	-
	Vifa2g03599	983	MobiDBLite	consensus disorder prediction	908	922	-	-
	Vifa2g03599	983	Pfam	Weak chloroplast movement under blue light	332	899	IPR008545	-
	Vifa2g03599	983	Coils	Coil	724	779	-	-
	Vifa2g03599	983	Coils	Coil	689	716	-	-
	Vifa2g03599	983	PANTHER	HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED	333	973	-	-
	Vifa2g03599	983	Coils	Coil	368	430	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03599	Vifa-Chr2	1045537926	1045542040	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03599	-		-	gmx:100812902	1224.15

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g03599	2	1045537926	1045542040	Vifa2g03599	2	1045537926	1045542040	ECH
	Vifa3g04918	3	1428833093	1428836336	Vifa2g03599	2	1045537926	1045542040	PCT