Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03536 ATGGATTCCATTCCTTTTCTCGACGGCAACATACACAAGATTCTCGATTCCCGATACCTTCACCCTCGCCTTGATGTTAATCAGAGTTTGCAGACACACTCCTCTTTGATTCGGAGGCTTTCTCAAGAAAATGAGTTAGAGGGACATCTTGGTTGTGTTAATACCGTGGCTTGGAATTCCAAAGGTTCATTGTTGATATCCGGATCTGATGATACACGGATTAATATTTGGAGCAATTATAGTCAGAAACTAGTGCATTCCATTGATACTGGACATACTGCAAATATATTCTGTACTAAGTTTATACCGGAAACTTCTGATGAGCTTGTAGTCTCTGGAGCTGGAGATGCTGAAGTTCGGTTATTCAATAGGTCTCGCGTAAGTGGGAATGGACTTGATGATATTGCCATTGTTCCGTCAGCACTTTACCAATGTCACACTCGTAGAGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTGGTATGGAGTGCTAGTGAAGATGGAACCTTAAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCTCCTGCAGGAGCTTCACACCAAGAGTGTCACAATGTTCTTCTTGATTTGCGGAATGGAGCTAAAAGATCCCTTGGCGATCCCCCTAAACAAGTCCTTTCTTTAAAATCTTTTGATATTAGTTCAACTAGACCTCATTTGCTCCTTGTTGGCGGGAGTGATGCTTTTGCACGTCTGTATGATAGAAGGATGCTACCACCTCTGAGCTCCTCTGGGAAAAGAATGTCCCCACCTCCCTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGACCGTGGACATCCAAATTTGCACTTAACTCACGTTACTTTTAGTCCTGATGGATCTGAGGTTCTCCTTAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTAAATCATGCTGGAGTGAATGAGGTGCAATATACTTCAGGTGATGTATCAAAGCTGGTGACTTACTCTCCAACAGTTAACGGGGTAGAGTTGCAGCCTTTTGTGCCTAGTGTCTTCCCAAATGGTTTTCGAGCTAAAAAGAACATCGCTGCTAAGCTTGACAAGTGTAGGAAACTAATAAAATATGCTAAGAAGTCCTTAGAGGAGGGGGTGTTCTATTATGGAATTGAGGCATGCAATGAAGTTTTGAATGGCTACAATCATATTATTGGGCCTGCACTAAAACATGAATGCTTGTGTACTCGTGCTGTGCTATTGCTTAAGAGGAAGTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCCATGCTGCTAGGAAAATTGATAAATCCTCATATAAACCACTGTACTACATGTCAGAAGCTTTGTCTCAGTTGGGTAAACACAAAGAAGCTTTGGATTTTGCTGTTGCTTCCCACTCGCTTGCCCCATCCAAATCTGAAGTTGCTGAAAGAGTGGAGAAGGTGAAGAAGGATATTGCTTTAGCTGAAACTGAGAAAAATAGTAAGACAAATGATGGAGCATCAAGGATTGACGGAAGAGGTGGAAGAATGTTATCATTAAGTGACATACTATACCGATCGGAGGCTAATAGTGATGCTTCGCAAGATGGTCCGGGATCTGACAGGGATGATTCTGATTATGACGAGGATTTGGAGTTGGACTTTGAAACATCAATATCTGATGATGAGGAACATGATTCTGATTCAAATATTCTTCATGGGAGTTTGAATCTTAGAATTCATCAAAGAGGTGACTCAGAAGAACATGTTGGTGCAAGTGGTTCGTGTGAATCACCCTCCTCCTCCTCCTCATCATCACAGAATGGTAGAGCATCATATCAGCCTGAAGCAGCAATTGATATGAAGCAAAGATTTATTGGACACTGCAATGTGGGGACTGATATAAAACAGGCCAGTTTTCTTGGTCAAAGAGGTGAATATGTTGCCAGCGGAAGTGATGATGGGAGATGGTTTATTTGGGAAAAGCGGACTGGTAGACTCATGAAAATGCTGAGTGGCGACGAATCTGTTGTAAATTGCATACAATGTCATCCGTTTGATTTTGCTGTGGCAACCAGTGGGATTGACAGCACAATAAAGATATGGACTCCAAGTGCTCCTGTTCCTTCTTCGGTAGCTGGTGGTTCTGCAGGACCAGAGACTGGTGATGTGTTGACTGCTATGGAGAACAATCAACAGAAGTTATCCCGTAATAGGGATTCAATCCTGCCCTTTGAGCTCTTAGAACCATTTAGAATGCATGAATTTCCTGAAGGATCACTACGCATGCGCCCTTTTGAATGTGCTCAAAGCTAA 2301 0.4224 MDSIPFLDGNIHKILDSRYLHPRLDVNQSLQTHSSLIRRLSQENELEGHLGCVNTVAWNSKGSLLISGSDDTRINIWSNYSQKLVHSIDTGHTANIFCTKFIPETSDELVVSGAGDAEVRLFNRSRVSGNGLDDIAIVPSALYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGASHQECHNVLLDLRNGAKRSLGDPPKQVLSLKSFDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSSGKRMSPPPCVNYFCPMHLSDRGHPNLHLTHVTFSPDGSEVLLSYSGEHVYLMNVNHAGVNEVQYTSGDVSKLVTYSPTVNGVELQPFVPSVFPNGFRAKKNIAAKLDKCRKLIKYAKKSLEEGVFYYGIEACNEVLNGYNHIIGPALKHECLCTRAVLLLKRKWKNDAHMAIRDCHAARKIDKSSYKPLYYMSEALSQLGKHKEALDFAVASHSLAPSKSEVAERVEKVKKDIALAETEKNSKTNDGASRIDGRGGRMLSLSDILYRSEANSDASQDGPGSDRDDSDYDEDLELDFETSISDDEEHDSDSNILHGSLNLRIHQRGDSEEHVGASGSCESPSSSSSSSQNGRASYQPEAAIDMKQRFIGHCNVGTDIKQASFLGQRGEYVASGSDDGRWFIWEKRTGRLMKMLSGDESVVNCIQCHPFDFAVATSGIDSTIKIWTPSAPVPSSVAGGSAGPETGDVLTAMENNQQKLSRNRDSILPFELLEPFRMHEFPEGSLRMRPFECAQS 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03536 766 SMART WD40_4 81 123 IPR001680 GO:0005515
Vifa2g03536 766 SMART WD40_4 39 78 IPR001680 GO:0005515
Vifa2g03536 766 SMART WD40_4 265 307 IPR001680 GO:0005515
Vifa2g03536 766 SMART WD40_4 659 698 IPR001680 GO:0005515
Vifa2g03536 766 SMART WD40_4 211 244 IPR001680 GO:0005515
Vifa2g03536 766 SMART WD40_4 613 656 IPR001680 GO:0005515
Vifa2g03536 766 SMART WD40_4 136 176 IPR001680 GO:0005515
Vifa2g03536 766 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 11 733 IPR045151 -
Vifa2g03536 766 FunFam Transducin family protein / WD-40 repeat family protein 564 741 - -
Vifa2g03536 766 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Vifa2g03536 766 Gene3D - 27 133 IPR015943 GO:0005515
Vifa2g03536 766 Coils Coil 473 500 - -
Vifa2g03536 766 ProSiteProfiles Trp-Asp (WD) repeats profile. 666 697 IPR001680 GO:0005515
Vifa2g03536 766 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Vifa2g03536 766 Gene3D - 134 332 IPR015943 GO:0005515
Vifa2g03536 766 MobiDBLite consensus disorder prediction 579 608 - -
Vifa2g03536 766 SUPERFAMILY TPR-like 380 476 IPR011990 GO:0005515
Vifa2g03536 766 Gene3D Tetratricopeptide repeat domain 348 487 IPR011990 GO:0005515
Vifa2g03536 766 Pfam WD domain, G-beta repeat 45 78 IPR001680 GO:0005515
Vifa2g03536 766 MobiDBLite consensus disorder prediction 588 608 - -
Vifa2g03536 766 Gene3D - 540 727 IPR015943 GO:0005515
Vifa2g03536 766 MobiDBLite consensus disorder prediction 523 543 - -
Vifa2g03536 766 SUPERFAMILY WD40 repeat-like 39 697 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03536 640 750 Miscellaneous Gene Families AT5G08390 28.319 4.60e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03536 K11807 - gmx:100793917 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03536 2 1026306241 1026330459 Vifa2g03536 2 1026306241 1026330459 ECH