Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03527 ATGACCAATACAAGTGCTGAATTGTCTCAGGGAAATAATGGCGGTGCTTCTATTCCTCCTCCTAGTCCCCAGTCTGGACCTCCAGAGCACCAGCCTTCTCGTGGTTCCTGCAACAATGCGATTTTCAAGAGTGGGCCGCTTTTCATATCTTCCAAAGGAATTGGATGGACATCCTGGAAGAAAAGGTGGTTTATTTTAACACAAACTTCACTTGTTTTCTTCAGAAGTGATCCGAATGCCGTCCCTCTAAAGGGAAATGAAGTGAATTTGACCCTGGGAGGCATTGACCTCAACAATTCAGGCAGCGTCATTGTTAAAGCAGATAAGAAACTTTTGACTGTACAATTTCCCGATGGTCATGATGGACGAGCATTCACACTCAAGGCTGAAACTACGGACGACTTGTACGAGTGGAAGATTGCACTCGAGAAAGCTTTGGCACAAGCACCAAGTGCTGCCAATGCGTCGGAGCAAAATGTGAAGGATAGAGAACCAGCCAAATCTACGGTAATTGGCAGACCGATTTTACTTGCATTGGAGGATGCTGATGGAACTCCATCGTTTTTGGAGAAAGCGCTGAAATTCATGGAAGAGCATGGAGCTAGTGTAGAAGGGATCTTGCGTCAAGCAGCTGATGTTGATGATGTTGAACGTCGTGTTCGGGAATATGAACAAGGAAAAACTGAGTTTGCTCCAGATGAAGATGCACATGTCATTGGCGATTGTATTAAGCATGTTATTCGGGGATTGCCATCTTCTCCGGTCCCTGCATCTTGCTGTAAGGCACTGTTAGAAGCTTGCCGAACTGAACGTGGTGTTAGAGTTGCTTCTATGCGCGCAGCAATAAATGACACTTTCCCTGAACCAAATCGCCGCCTATTACAAAGAATACTGCTGATGATGCAAACTGTGGCTTCACAAAAAGCTGTAAACAGAATGAGTTCCTCAGCTGTGGCAGCTTGCATGGCACCATTACTTCTTCGTCCCCTTCTAGCCGGAGAGTGTGAGATCGACAACGATTTTGATGTAGGTGGTGATGGTTCTGTTCAACTTCTACAAGCAGCTGCTGCTGCTAACCATGCCCAAGCAATTGTTATAACCTTATTAGAAGAATATACCAGCATATTCGGGGAAGCTTCCGTGTCCCCTGATATATACACCGACTCAGAAGAGAGTGGATCTGAGAGTGAGGAAGGTACTGATGATGATCTATCCTATGATGATGATGACGATGATGATGATGATTATGATGATGATGAATCAATGCAAGAATCTGATGAAGAAGATCTTGTCAGCGAATCCTACACCGAAACTGGAGATTCTGAGGCTGACGATTACGATGACAAGGATCATGATCACTCTCATTCAAGTTCAAAATCCTCAGATGCGAGTGATGATGCTAAAGTCAATCAAATGAAAACAAAGTCACGTGAAGGCTCACCGACTGAACATGAAAATGCCAGAAGTGTTGAAAATCTCACGAGTCCAAAGAATGCAGCTAATGCAGATAAAACCAATAAGCCTGTTGAAACTTCCACTGATGTAGCCGGTATGAATAATTCATATTCTCCTAGCCAATCACATATGCAAAAATCTGCAACCATGTCCAATGGCCCAGCACCTCGGCACCGAAACATGTTGGGGCGAACCTCTGCAAGGAAGAACTTATCTATGGAATCCATTGACTTTCCTCTTGAAGAGGATGATGAAATTGAAAAGCTCGAAGCTGCTAAGACAGAACTACAAAGCCAAATTGCAGACGAGGTGAAGGAAAATGAAAAGCTGCAATCAAAGATAGACGAACGAAAGAAAGACTTGCAAGAGCGGCGTTTGGCACTTGAGCAAGATGTGGCTAAACTACAAGAACAGTTACACAAGGAGAAGAGTTCTCGGGCAACTCTTGAGACCAGGATAGAACTTCAGGAATTAGCTTTGGTAGAAGTGGATCTTTCCAACTTAGAGCGGATGGTTGAGGAGCTTGGGCAGCGGCTTAATGTTAAAGTCGAGCGTAAGTATCGATCTACTTCAAATGTCAGGAAGACATCCCGGCAGTTATCAAATCAAGAAAGAAAAATGAAACATAAGGGAGATTCTGAAGTTGCTGGGACATCACATTATGAAAGGTCACTAAGTAAGGACTCTTATCTTAGTGGAGGAGAAAGTGATTCTGAGAGAAAGCCAGAGTCGACACCTTTACAAAACAAACAGCCACCAACTTCCAAGAGAACTAGTTCAAGGGGTGAGGGAGCAAATACTTCTGCACTCACAAAACTGACATCCAGGCTGAACTTTTTGAAGGTGGGCCGTAGTCAAGCTGTAAATGAACTTCAAAACGCGGATAGAGGCCGAGACTCGAGTCACTCTTCGCGCAATCAAGATAAAGGAAAAGGATCCGAACGTCACCAAACACTTCCTTCCCCGAGACCGAACCCAGAAAAAGGTAAAGTCATGGACAATTCCAAGTCACTCACAGAAAAAAGATCGAGCAAAGGTAAATCACATCAAAGTTCAGAGAAACTAAGAAAGTCAGATAGTCAGCCAGGCTACCACTCAGAAGGATGGGATCAACATCCAACTTACTTAGAAAGAGGAAGGTCCGAAGGGCATCATCAGTCTTTTAACGTGGATAAAGGTCGATGA 2640 0.4413 MTNTSAELSQGNNGGASIPPPSPQSGPPEHQPSRGSCNNAIFKSGPLFISSKGIGWTSWKKRWFILTQTSLVFFRSDPNAVPLKGNEVNLTLGGIDLNNSGSVIVKADKKLLTVQFPDGHDGRAFTLKAETTDDLYEWKIALEKALAQAPSAANASEQNVKDREPAKSTVIGRPILLALEDADGTPSFLEKALKFMEEHGASVEGILRQAADVDDVERRVREYEQGKTEFAPDEDAHVIGDCIKHVIRGLPSSPVPASCCKALLEACRTERGVRVASMRAAINDTFPEPNRRLLQRILLMMQTVASQKAVNRMSSSAVAACMAPLLLRPLLAGECEIDNDFDVGGDGSVQLLQAAAAANHAQAIVITLLEEYTSIFGEASVSPDIYTDSEESGSESEEGTDDDLSYDDDDDDDDDYDDDESMQESDEEDLVSESYTETGDSEADDYDDKDHDHSHSSSKSSDASDDAKVNQMKTKSREGSPTEHENARSVENLTSPKNAANADKTNKPVETSTDVAGMNNSYSPSQSHMQKSATMSNGPAPRHRNMLGRTSARKNLSMESIDFPLEEDDEIEKLEAAKTELQSQIADEVKENEKLQSKIDERKKDLQERRLALEQDVAKLQEQLHKEKSSRATLETRIELQELALVEVDLSNLERMVEELGQRLNVKVERKYRSTSNVRKTSRQLSNQERKMKHKGDSEVAGTSHYERSLSKDSYLSGGESDSERKPESTPLQNKQPPTSKRTSSRGEGANTSALTKLTSRLNFLKVGRSQAVNELQNADRGRDSSHSSRNQDKGKGSERHQTLPSPRPNPEKGKVMDNSKSLTEKRSSKGKSHQSSEKLRKSDSQPGYHSEGWDQHPTYLERGRSEGHHQSFNVDKGR 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03527 879 Coils Coil 643 670 - -
Vifa2g03527 879 Coils Coil 571 637 - -
Vifa2g03527 879 CDD PH 43 138 - -
Vifa2g03527 879 SMART PH_update 41 149 IPR001849 -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 856 879 - -
Vifa2g03527 879 Gene3D Rho GTPase activation protein 153 378 IPR008936 -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 774 879 - -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 1 19 - -
Vifa2g03527 879 Pfam RhoGAP domain 186 329 IPR000198 GO:0007165
Vifa2g03527 879 ProSiteProfiles PH domain profile. 40 147 IPR001849 -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 446 485 - -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 486 539 - -
Vifa2g03527 879 SUPERFAMILY PH domain-like 27 155 - -
Vifa2g03527 879 Pfam PH domain 43 146 IPR001849 -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 1 37 - -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 390 445 - -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 730 757 - -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 814 848 - -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 684 702 - -
Vifa2g03527 879 SUPERFAMILY GTPase activation domain, GAP 184 378 IPR008936 -
Vifa2g03527 879 CDD RhoGAP 186 324 - -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 671 757 - -
Vifa2g03527 879 ProSiteProfiles Rho GTPase-activating proteins domain profile. 177 376 IPR000198 GO:0007165
Vifa2g03527 879 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 8 791 - -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 383 555 - -
Vifa2g03527 879 SMART RhoGAP_3 183 373 IPR000198 GO:0007165
Vifa2g03527 879 Gene3D - 29 148 IPR011993 -
Vifa2g03527 879 MobiDBLite consensus disorder prediction 780 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03527 Vifa-Chr2 1023863985 1023870083 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03527 - - gmx:100817373 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03527 2 1023863985 1023870083 Vifa2g03527 2 1023863985 1023870083 ECH