Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03519 ATGCGTGTCACCGGGGATTTAGGGTTTTCGAACCTAATCCTTGTGGTGGTTTGTGTGGTGTTGCCGGTGATTGGTTTTGTGATTCGCCGGAAATGTCAGGTTGCGGTGGCTAGGAATGAGGAGATCAAGAGGCTTTTGATTTTGGCTGCTGAGGAAACTGAGAGGGTTGAGAGAGAGGCGTTATATGTGTCTGCTCCGGTGGTTTTTGCTACTGCTAACAATTATCAATGTGCTCTTTGCTATTTTCCTGCCACTGCGCGGTGTGCTAAGTGCAAATCCGTTCGCTACTGTTCTACTCATTGTCAAACAGTTCATTGGCGTCAAGGTCATAAATTGGAATGCCATCCTCCCAGCAAAACACATCATAGTGATGGCGAAATAAGTGGTATTGACAAGAGGAAAGTGGAGCAAGATTACTCTAGTATCCATGAGAAATCTGAAAACAGAGAGGAAAATTTAGCAGATACTAATTCTGAATTATCTAGTAACTCATTTTCTGGATTTTCGGCTTCCCCAAGTTCTAGTGATTCATCTGATGATTCATCTGTCTGTGAGAGTATCGTCTCAAATGAGCATGACCAATCAGAGGGACATATTTCTTTTGTTCCCACCCTTGTCATAACTGATAAAACCACAAGCAATAGCAATGTGGATGCAGCAATCTCTTCTTCTCCAAAGTTTGCTAGTTTGCTTGATTCAGTTGGTGGTTCTTCTACAGTTCATAAATTAAATCATATCACATCTGGTTCTAGTAAAGGAGAGAGGAAACTTGCATCTAATGGTGCTTCAGGCTCAAGCGTGTTGAAGGGTGTGAAAATTGAGCCTTCTGGATTCTGGGATAAAGCTCTTGATTCAGGAGGGATTAAAGATAACACTAATAATAAAACTTATCCATCCCATTCTGATGAATCCACTTGTGGAAAGGCTGATTCTGGATTGTCATTCCGCTTTCAATTCGGCACCATGTCTCCTTTGCATGTACGTGATACTGAGGCTAAGGAATCTTTGCCTAATGACACTCTTCCAAACTCTGTTGGGAAGAATATGCCACATCCAGGATCAGCGTCCTCTGAGAACAACAACATGAATTCTTTAAAGGGGAGGAACCTCTCATTCACCAATGGTGGAGATCCCAATTTTATAAGCAAAACTCGCAGTGGTTCTGGATCTTATCAATTGGAATCTAAAGATAGCTCTGAGCCACCTCTGCATTCCTTTTCCTCCCAATCCTCCAGTCTTGGCAAAGATCCAGGTTCTGCAGATACTAGGAGCATCCTTAACTTGCAACCATCTGGCTCTGTGGCATCAAATCATGTTGTGGACAACCATGGCTTCTCCTCTAAGTCCGTCATTGTTACATGCAAGACAGATGAGCTTGCTGATTCTGAATTAGCTTCTACAAATGAAGGACATTCACAGCCAAGTACAAAACATAGAAATAATGACATTAAATATGGGACTGCCACTTCTTCTCATATTAGCTATTCTGCAAATTCTAAGAGTGGCTTAAAAACATCTGTTTTGAAAGTCGTTGATCAGATTAGAGGATCAAATTTGTCAAAGCACACTCCTTTAGCCCTTGGGAGTGACATTGCTGGAAAATACAATGATAAGGGTCTTTTTCCATATGAATCATTTGTCAAGCTTTATAACCTCAACAAGGTGGAGTTGCGTCCGTTCGGTCTCATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTACTTCAGTGCCTAGCTTTTACTCCACCCTTAACTGCTTATTTTCTTCAAGGACTACATTCTAAATCATGTGCAAATAAAAAATGGTGCTTCACTTGTGAATTTGAAAGTTTGATTTTGAAGTCAAAGGACACAAAATCCCCACTATCTCCAATGAGCATACTTTCTCAATTACAGCGTATTGGGAGTCAGCTTGGTAATGGCAAAGAAGAAGACGCACATGAATTTATAAGATATGCTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGTACCGGGTTCATTGGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGATACCTTCGTTCAAAGATAAAATGCATGAAATGTGGTGGAAAGTCCGAGCGTCGGGAAAGAATGATGGATCTAACTGTTGAGATAGAAGGGGAGATATCAACACTTGCAGAGGCCCTTCGACGTTTTACAAGCACTGAGACTTTGGATGGAGAAAATAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAATCTCAGAGGCACCCAATATTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGAAAATTCGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTGATCTTGCGCCTTTCACGAGGCACTATGTCTGCTACTTGAAGAATATTCAAAACAAGTGGTTCAAGGTTGACGACAGTGTGGTGACAGCTGTTGAAGTGGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTTTATGCAAGGTGCTCTCCAAGGGCCCCTAAATTAATTAGGAACATGATACTATCCCCAGATTCAAAAAGTAAGGTCAATGGAAAGTCTCCAACGAAAGCAAGATATGTGTCGTCAAATTCTGCAGCTGAACCCATCAGTAGTTCAGTTTCTTCAAACAGCTCACCCACCATGGAGTCTTTCTATTCAAGTACTGATAGTACCCGTGATTCAACTAGCATGGACGACTTCTCCGACTATATTTTTGGTGATTCAGGGCATGGATGGAGTAGCCCGTGGAGGACTTCTGATTCTGACTCGTCCTCATCCTCTCCCTTGAATTACAGACATTCACCTCTATCAGACATGGACAAGTATGATTCAGTGTCTCCAGATACAACTAGTTTGCGAATTCCCACAGGATTTAACCATTCTAATGATAAGAACTCTGGTGTATCGAGTAGAAAGTCGAGGAAAAGAACGGATTGA 2967 0.4139 MRVTGDLGFSNLILVVVCVVLPVIGFVIRRKCQVAVARNEEIKRLLILAAEETERVEREALYVSAPVVFATANNYQCALCYFPATARCAKCKSVRYCSTHCQTVHWRQGHKLECHPPSKTHHSDGEISGIDKRKVEQDYSSIHEKSENREENLADTNSELSSNSFSGFSASPSSSDSSDDSSVCESIVSNEHDQSEGHISFVPTLVITDKTTSNSNVDAAISSSPKFASLLDSVGGSSTVHKLNHITSGSSKGERKLASNGASGSSVLKGVKIEPSGFWDKALDSGGIKDNTNNKTYPSHSDESTCGKADSGLSFRFQFGTMSPLHVRDTEAKESLPNDTLPNSVGKNMPHPGSASSENNNMNSLKGRNLSFTNGGDPNFISKTRSGSGSYQLESKDSSEPPLHSFSSQSSSLGKDPGSADTRSILNLQPSGSVASNHVVDNHGFSSKSVIVTCKTDELADSELASTNEGHSQPSTKHRNNDIKYGTATSSHISYSANSKSGLKTSVLKVVDQIRGSNLSKHTPLALGSDIAGKYNDKGLFPYESFVKLYNLNKVELRPFGLINCGNSCYANAVLQCLAFTPPLTAYFLQGLHSKSCANKKWCFTCEFESLILKSKDTKSPLSPMSILSQLQRIGSQLGNGKEEDAHEFIRYAIDTMQSVCLMEAGVNVPGSLEEDTTLMGQTFGGYLRSKIKCMKCGGKSERRERMMDLTVEIEGEISTLAEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTISEAPNILTVALKRFQSGKFGKLNKPIQFPEILDLAPFTRHYVCYLKNIQNKWFKVDDSVVTAVEVERVLTKGAYMLFYARCSPRAPKLIRNMILSPDSKSKVNGKSPTKARYVSSNSAAEPISSSVSSNSSPTMESFYSSTDSTRDSTSMDDFSDYIFGDSGHGWSSPWRTSDSDSSSSSPLNYRHSPLSDMDKYDSVSPDTTSLRIPTGFNHSNDKNSGVSSRKSRKRTD 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03519 988 MobiDBLite consensus disorder prediction 855 904 - -
Vifa2g03519 988 Gene3D - 63 119 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 328 426 - -
Vifa2g03519 988 Gene3D Cysteine proteinases 553 848 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 245 266 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 137 195 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 137 154 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 282 307 - -
Vifa2g03519 988 Coils Coil 39 59 - -
Vifa2g03519 988 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Vifa2g03519 988 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 561 576 IPR018200 GO:0004843|GO:0006511
Vifa2g03519 988 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 953 976 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 922 943 - -
Vifa2g03519 988 FunFam Ubiquitin carboxyl-terminal hydrolase 15 68 118 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 336 426 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 287 307 - -
Vifa2g03519 988 Pfam Ubiquitin carboxyl-terminal hydrolase 560 795 IPR001394 GO:0004843|GO:0016579
Vifa2g03519 988 MobiDBLite consensus disorder prediction 922 988 - -
Vifa2g03519 988 Pfam Ubiquitin carboxyl-terminal hydrolase 797 835 IPR001394 GO:0004843|GO:0016579
Vifa2g03519 988 SUPERFAMILY HIT/MYND zinc finger-like 73 117 - -
Vifa2g03519 988 MobiDBLite consensus disorder prediction 155 195 - -
Vifa2g03519 988 FunFam Ubiquitin specific peptidase 36 554 668 - -
Vifa2g03519 988 SUPERFAMILY Cysteine proteinases 556 841 IPR038765 -
Vifa2g03519 988 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 560 838 IPR028889 -
Vifa2g03519 988 Pfam MYND finger 77 114 IPR002893 -
Vifa2g03519 988 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 200 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03519 Vifa-Chr2 1020855192 1020862507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03519 540 842 Miscellaneous Gene Families AT4G31670 47.130 1.29e-103 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03519 K11855 - gmx:100795674 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03519 2 1020855192 1020862507 Vifa2g03519 2 1020855192 1020862507 ECH