Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03500 ATGGTGTTCTCTGCTGCGCTTTCTTCTTCAACCTTCACTCTTCCATCTCCACTTCGATCCCACTCCTTCACTCCCTTACCACCTCGATCCACCGCATTCCCTCTTCGCAATTTCATCAAAACCCGAATGGAAGCCCTAACCAACACCGACCAAGCAAACTCTAAAGAAGCTAAACTCTGGGGTGGAAGATTCCAAAAACCCGTTACCGACATCGTTGAACGATTCACCGAATCCGTCTCTTACGATAAACAGTTGTACAAACATGACATTCTCGGAAGCATAGCGCATGCAACCATGCTCGCTAAACAAGGTTTGATCAGTGAGAGTGATAGGGATTCTATAATTGAAGGTTTGAGAGAGATTGAAAAGAGAATTGAGAATGGTGAGTTTCATTGGAGAGCTGATAGAGAAGATGTTCATATGAATATTGAAGCTGCACTTACTGATTTGATTGGTGAGCCTGCTAAGAAGCTACATACTGCACGTAGTAGAAATGATCAAACAGTTACTGATATGAGACTTTGGTGTCGCGATGCTATTGATAAGATTGTTGCAAGTATGAGACAGCTTCAGGTTTCGCTTCTTAGGCTGGCTTTGAATAATCAGGATGTTATTGTTCCTGGCTATACTCATCTGCAGCGTGCGCAGCCGGTTTTACTTCAGCACCTTCTGCTTGCTTATGTTGAAGAGATTGAACGTGATGCTGGTCGTATGATTGATTGTAGAGCTAGGATGAATTTCAGTTCTTTAGGAGCTTGTGCACTGGCCGGTACAGGGCTCCCCATTGATCGGTTCATGACGTCAGATGCATTGGGATTTACAGCTCCGATGAGGAATAGTATTGATGCAGTTTCTGGCCGAGATCATCTACTGGAGTTACTTTCTGCTAATGCCATCACAGCAGTGCATCTTTCTCGACTTGGTGAAGAATGGGTATTGTGGGCTTCAGAGGAATTTGGATTTATCACTCCAAGTGACTCTGTTTCAACGGGAAGCAGCATAATGCCTCAGAAAAAGAATCCGGACCCAATGGAACTTGTTCGTGGTAAGTCTGGCAGAGTCATAGGGGGTTTGGTCACTCTTCTAACAGTGTGCAAAGGACTTCCACATGCTTACAATCGCGATTTGCAGGAAGACAAAGAACCAGTGTTTGACAGTGTTAGAACTATTTTGGGAATGCTTGAAGTCTCAGCAGAATTTGCATTGAACATTACTTTCAATCGGGAAAGAATACAAAAGTCTTTACCTGCCGGTTTTCTTGATGCAACAACACTTGCTGACTATCTTGTTAACAAGGGTGTGCCGTTCAGAACATCTCATGAAATAGCTGGAAAATCTGTTGCCTTGTGTACTTCGAAGAATTGCCAACTGCTGGACTTGAGCCTTGATGAACTGAGAAGTATAAATCCTGTCTTTGACAATGATGTTTATGAATTTCTTGGGGTAGAAAACACGATCAAGAAATTTGTTTCATATGGTTCCACCGGGTCTGCTTGTGTTGCCGAGCAACTTGATTATTGGATTAAAAAGCTTGAAATTAAGTGA 1545 0.4298 MVFSAALSSSTFTLPSPLRSHSFTPLPPRSTAFPLRNFIKTRMEALTNTDQANSKEAKLWGGRFQKPVTDIVERFTESVSYDKQLYKHDILGSIAHATMLAKQGLISESDRDSIIEGLREIEKRIENGEFHWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQTVTDMRLWCRDAIDKIVASMRQLQVSLLRLALNNQDVIVPGYTHLQRAQPVLLQHLLLAYVEEIERDAGRMIDCRARMNFSSLGACALAGTGLPIDRFMTSDALGFTAPMRNSIDAVSGRDHLLELLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSGRVIGGLVTLLTVCKGLPHAYNRDLQEDKEPVFDSVRTILGMLEVSAEFALNITFNRERIQKSLPAGFLDATTLADYLVNKGVPFRTSHEIAGKSVALCTSKNCQLLDLSLDELRSINPVFDNDVYEFLGVENTIKKFVSYGSTGSACVAEQLDYWIKKLEIK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03500 514 FunFam Argininosuccinate lyase chloroplastic 285 442 - -
Vifa2g03500 514 FunFam Argininosuccinate lyase 417 488 - -
Vifa2g03500 514 FunFam Argininosuccinate lyase 57 162 - -
Vifa2g03500 514 Pfam Argininosuccinate lyase C-terminal 419 486 IPR029419 -
Vifa2g03500 514 PRINTS Argininosuccinate lyase family signature 157 179 - -
Vifa2g03500 514 PRINTS Argininosuccinate lyase family signature 249 265 - -
Vifa2g03500 514 PRINTS Argininosuccinate lyase family signature 198 218 - -
Vifa2g03500 514 PRINTS Argininosuccinate lyase family signature 287 311 - -
Vifa2g03500 514 PRINTS Argininosuccinate lyase family signature 366 385 - -
Vifa2g03500 514 PRINTS Argininosuccinate lyase family signature 331 347 - -
Vifa2g03500 514 CDD Argininosuccinate_lyase 78 511 IPR009049 GO:0004056|GO:0042450
Vifa2g03500 514 ProSitePatterns Fumarate lyases signature. 331 340 IPR020557 GO:0003824
Vifa2g03500 514 Pfam Lyase 62 356 IPR022761 -
Vifa2g03500 514 PRINTS Fumarate lyase superfamily signature 158 176 IPR000362 -
Vifa2g03500 514 PRINTS Fumarate lyase superfamily signature 287 314 IPR000362 -
Vifa2g03500 514 PRINTS Fumarate lyase superfamily signature 203 221 IPR000362 -
Vifa2g03500 514 PRINTS Fumarate lyase superfamily signature 331 347 IPR000362 -
Vifa2g03500 514 Gene3D - 416 488 - -
Vifa2g03500 514 Gene3D - 78 285 IPR024083 -
Vifa2g03500 514 Gene3D Fumarase/aspartase (Central domain) 175 504 - -
Vifa2g03500 514 PANTHER ARGININOSUCCINATE LYASE 34 513 IPR009049 GO:0004056|GO:0042450
Vifa2g03500 514 SUPERFAMILY L-aspartase-like 59 511 IPR008948 GO:0003824
Vifa2g03500 514 NCBIfam argininosuccinate lyase 59 506 IPR009049 GO:0004056|GO:0042450
Vifa2g03500 514 Hamap Argininosuccinate lyase [argH]. 58 509 IPR009049 GO:0004056|GO:0042450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03500 K01755 - gmx:100796544 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03500 2 1014779393 1014782326 Vifa2g03500 2 1014779393 1014782326 ECH