Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03490 ATGTCCACCGCTAGCGAAGATTTCCAAGGTGTTTCAAATTGTTATGTGTTCAAGAGCCGGTTGCAGGAGTATGCTCAGAAAGCAGGACTCCCCACGCCTGTGTATGAAACTATCAAGGACGGGCCTTCCCATGAACCTTGTTTCAGATCAACGGTGATTGTGAATGAAGTTCGGTATGATTCTTTGCCTGGATTTTTTAACCGTAAAGCAGCAGAGCAGTCAGCTGCAGAGGTTGCTTTGATGGAGTTGGCCAAATCTGGTGAAGTTAATCACTCCATCACTCAACCTGTTCATGAAACTGGATTATGCAAGAATCTACTTCAGGAGTATGCTCAGAAAATGAACTATGCAATGCCAATGTATCAATGCAAAAAAGATGATACACCACCAGGTAGAGCACCGTTATTTTCATGTACAGTCGACATTGGAGGGATTCACTATGTTGGGGGAACAACAAAAACAAAGAAGGAAGCAGAGATAAAAGCCGCAAGAACTGCTTTATTAGCTATCCAGACAAATGCATCTCAGACTTCTCAAAACCAGTTTGGCCATTTGACTGTCATTCCATCCAGAAAAAGAGCAGCAGATTCTGTCGCTGATGAGGCTTCAAAAGCTCCAAAGCCTAAGAAAGCACGCTTTAAAAGGAAATTTCCCAAGAGGAAACCGTCTGAAGACAAGAAGCCTCGTGTTCAGACTGACAATACTGGCGATGGAGCAAATATCAATCACGGGATAGAATCACTTGCAACTGCTAATGATGAATCTGGCATTCAGGAAATCAAATCCGAAGCAATGTTCCCTTCAGAAGCTGTGAAGAATTTTGAGAATGGGATAGAGTCACTTGCAAGTGCTAATGATGAATATGGCATTCAGGAAATCAAATCCGAAGCAATGTTCACTTCAGAAGCTGTGAAGAATTCTGAGAGTGTGATAAAATCACTTGCAACTGCTAATGATGAATCTGGCATTCAGGAAATCAAATCCGAAGAAATTTTCCTTTCAGAAGCTGTGAAGAATTCTAAGAATGGAGTATCGACTAACCATCGTGAGAAAGAGACGATTATCCATCATGATGAATTTGGCATTCAGGAAATCAAATCCGAAGCAATATTCCCTTCAGAAGCTGGAGACGGGTCTTTTACTTTGAATAATCAAGAGGTTTTTGATAATGGGAAGTCAACAGAATTTCAACCCAAAGAGGTCAATCTTGAGAATGTTGTTACAGAAGTGTCGTTTGCACCAAGTGGAGACATGCCAGCAAATGGAGACATACCAGCAAAGAGCGATGGGATGTTAGACATACCAACAAAGAGCGTTGAGATGATCGAACAACATTGTAATGGAGATATGGTCTCAGGCAATTGA 1365 0.4161 MSTASEDFQGVSNCYVFKSRLQEYAQKAGLPTPVYETIKDGPSHEPCFRSTVIVNEVRYDSLPGFFNRKAAEQSAAEVALMELAKSGEVNHSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDDTPPGRAPLFSCTVDIGGIHYVGGTTKTKKEAEIKAARTALLAIQTNASQTSQNQFGHLTVIPSRKRAADSVADEASKAPKPKKARFKRKFPKRKPSEDKKPRVQTDNTGDGANINHGIESLATANDESGIQEIKSEAMFPSEAVKNFENGIESLASANDEYGIQEIKSEAMFTSEAVKNSESVIKSLATANDESGIQEIKSEEIFLSEAVKNSKNGVSTNHREKETIIHHDEFGIQEIKSEAIFPSEAGDGSFTLNNQEVFDNGKSTEFQPKEVNLENVVTEVSFAPSGDMPANGDIPAKSDGMLDIPTKSVEMIEQHCNGDMVSGN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03490 454 SMART DRBM_3 103 171 IPR014720 -
Vifa2g03490 454 SMART DRBM_3 17 84 IPR014720 -
Vifa2g03490 454 FunFam double-stranded RNA-binding protein 1 14 90 - -
Vifa2g03490 454 Gene3D - 17 98 - -
Vifa2g03490 454 PANTHER RIBONUCLEASE III 14 227 IPR011907 GO:0003723|GO:0004525|GO:0006364
Vifa2g03490 454 MobiDBLite consensus disorder prediction 196 243 - -
Vifa2g03490 454 SUPERFAMILY dsRNA-binding domain-like 104 171 - -
Vifa2g03490 454 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 16 85 IPR014720 -
Vifa2g03490 454 MobiDBLite consensus disorder prediction 208 222 - -
Vifa2g03490 454 Pfam Double-stranded RNA binding motif 104 168 IPR014720 -
Vifa2g03490 454 Pfam Double-stranded RNA binding motif 18 82 IPR014720 -
Vifa2g03490 454 SUPERFAMILY dsRNA-binding domain-like 16 83 - -
Vifa2g03490 454 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 102 172 IPR014720 -
Vifa2g03490 454 Gene3D - 99 172 - -
Vifa2g03490 454 CDD DSRM_AtDRB-like_rpt1 16 84 IPR044450 GO:0003725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03490 Vifa-Chr2 1010583642 1010585782 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03490 - - psat:127088277 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03490 2 1010583642 1010585782 Vifa2g03490 2 1010583642 1010585782 ECH