Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03489 ATGCACGGTCAACCTCGCAAACCGTTGAAGCAAGAAGATGAATCACTTTTATCAGCCAAAGCCGCAAAGCTTCGTACACTTCAATCTCAGTTCTTTGCCAATCACCGCGACCGCATATATACACAAGAAGCGTTAGATTTGAGCGCAAAGCTTCTTGAAACTAATCCAGAATGTTACACTGCTTGGAATTACAGAAAACTCGCTGTTCAACACAATCTCTCTCGATCCGATCCCGATTATGTCGCATTTCTCTTCCATCAGGAGCTTAAATTGGTGGAGAATGCGTTGAGGAAGAATTACAAGTCCTATGGTGCTTGGTATCATAGAAAATGGGTGCTCAGCAAGGGGCATTCGTCCATAGATGACGAATTGCGCCTTCTTAATGGTTTTCAGAAGGCTGATTCAAGGAATTTTCATGCTTGGAATTACCGAAGGTTTGTTACTTCACTGATGAAAAGATCAGATGAGGATGAACTGATATACACAGAGGAAGTGATAGGGGAGAATTTTAGTAATTACTCTGCGTGGCATAATAGAAGTGCGCTTTTATCAAATTTATTTAAAAGTAAGGCGGAAGAATTCCCCCTTGAAGAAAAAGTTTTGCAAGAGTATGAGCATGTCCGCAGTGCAATTTTTACTGATCCAGACGATCAGAGTGGCTGGTTTTATCATCTTTGGCTTATTGATCTAACAGTGAAAAATTATGCTCCTCTCCTTGTTTCATCTTGGCCATCTCATGGATCTAATATAACCCTAAATGGAAACAACTGCATAGATGGATGTGGTTTGTCTTTATTGAATAGCACACTATCAGACACTAGAACACTTCCAGTGATTCTATATTTCAATCAAGCTGTTGAAGGCATCAACCTATCTACAGTGGCTGTTAAATCTGAACTCTTGAAGGAAGATCTTGTTTGGAAACCACTTTCAACAAATAACTTGAGTACTGCTCAAGTTTGGGGTGCGTACCTAAACCTTGGTAATATGGAGCTCGAACAATCAAAAACTTACTCTATAAAGATCACTATTGGACATTCTATGGGTATTGTATCTTCAAATGGATATCAGTATGGGGATCCTTACCAAATTGCCTTTAAATTGTGCGTACAGACTGCTTCTACCAAACCTGTTGAAGAACAAGGTGGAAAGTTGACTTCATGGAAGGACAATAATTTCCAAAAAATCGATCATTTTGAAGACTCAGATTCCATTGTATCTGCTGATCTCCATATTCCAACAACTTCCGATTGGTGCATGAAGGCAATTGAAGAAGAAATAACTACTTTTCGGGATTTATTGTCTGAAGAAAAATGTAAAATTGGGAAGCTTTCACTTGCTAGACTTTTGACTGCTCTTGATTTGATAACACATCAACATGACAAAAGAAAAAACCACACTGAAGAAGTTCTTAAACTTTACACTGATTTGATGGAGTTGGATCCAACACATTCGCTATACTACAAGGATGAGCATAGTCTAGTATTACTAAAGCAGATAACATCATCTAGAGAATCTTTACTACCATATTGCTGCTACTATAAAGACGCAACAGAAGCAAATACTAGTTATGTTTGTCTTCGATTGCAAAATCTATCGCTGTCACGGATGGGGTCCTTTGAGAATTTACTGTGGGTGCAAATGCTAGACCTTAGCCACAACGATCTTCGATCAATTGAAGGGTTGGAAGCCATGCAACTTCTATCTTCCTTAAATCTGAGTCATAACAAATTTGGTAGTTTTACTGTTCTGGGGCCTCTCAGATCGCTCAAGTCACTTAAAGTGTTGGATATCTCTTACAACAAAATAGGCTCTCACTCGATTGACACAAGAAGATACTTATGCTCTTCTCCTTTAGCAAACACTGAAGTATTTGCCTGGGACCGTTTTGAAATCCTTTGCGGCAGTTTTAGCGCCACAAAGTTTTGGGAAGCTTTCTTAATATTTGAAAGCTTGAATTTGACAGATTTGAATGCAACAGGAAATGCAGTTGCAGATGAGAACTTCACGTCATTTATCGTCAAAGTTTTGCCCACACTAAAGTGCCTAAATAGTGAAGAGTTAGCTTGA 2070 0.3889 MHGQPRKPLKQEDESLLSAKAAKLRTLQSQFFANHRDRIYTQEALDLSAKLLETNPECYTAWNYRKLAVQHNLSRSDPDYVAFLFHQELKLVENALRKNYKSYGAWYHRKWVLSKGHSSIDDELRLLNGFQKADSRNFHAWNYRRFVTSLMKRSDEDELIYTEEVIGENFSNYSAWHNRSALLSNLFKSKAEEFPLEEKVLQEYEHVRSAIFTDPDDQSGWFYHLWLIDLTVKNYAPLLVSSWPSHGSNITLNGNNCIDGCGLSLLNSTLSDTRTLPVILYFNQAVEGINLSTVAVKSELLKEDLVWKPLSTNNLSTAQVWGAYLNLGNMELEQSKTYSIKITIGHSMGIVSSNGYQYGDPYQIAFKLCVQTASTKPVEEQGGKLTSWKDNNFQKIDHFEDSDSIVSADLHIPTTSDWCMKAIEEEITTFRDLLSEEKCKIGKLSLARLLTALDLITHQHDKRKNHTEEVLKLYTDLMELDPTHSLYYKDEHSLVLLKQITSSRESLLPYCCYYKDATEANTSYVCLRLQNLSLSRMGSFENLLWVQMLDLSHNDLRSIEGLEAMQLLSSLNLSHNKFGSFTVLGPLRSLKSLKVLDISYNKIGSHSIDTRRYLCSSPLANTEVFAWDRFEILCGSFSATKFWEAFLIFESLNLTDLNATGNAVADENFTSFIVKVLPTLKCLNSEELA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03489 689 ProSiteProfiles Leucine-rich repeat profile. 567 588 IPR001611 GO:0005515
Vifa2g03489 689 Gene3D Ribonuclease Inhibitor 514 689 IPR032675 -
Vifa2g03489 689 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 2 499 - -
Vifa2g03489 689 SMART LRR_sd22_2 590 610 - -
Vifa2g03489 689 SMART LRR_sd22_2 543 564 - -
Vifa2g03489 689 SUPERFAMILY Protein prenylyltransferase 21 501 - -
Vifa2g03489 689 SUPERFAMILY L domain-like 521 604 - -
Vifa2g03489 689 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 119 153 IPR002088 GO:0008318|GO:0018342
Vifa2g03489 689 FunFam Rab geranylgeranyl transferase like protein 504 689 - -
Vifa2g03489 689 PRINTS Leucine-rich repeat signature 590 603 - -
Vifa2g03489 689 PRINTS Leucine-rich repeat signature 546 559 - -
Vifa2g03489 689 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 154 188 IPR002088 GO:0008318|GO:0018342
Vifa2g03489 689 Gene3D Protein prenylyltransferase 1 241 - -
Vifa2g03489 689 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Vifa2g03489 689 FunFam Geranylgeranyl transferase type-2 subunit alpha 6 236 - -
Vifa2g03489 689 ProSiteProfiles Leucine-rich repeat profile. 545 566 IPR001611 GO:0005515
Vifa2g03489 689 Pfam Protein prenyltransferase alpha subunit repeat 156 186 IPR002088 GO:0008318|GO:0018342
Vifa2g03489 689 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Vifa2g03489 689 Pfam Protein prenyltransferase alpha subunit repeat 86 114 IPR002088 GO:0008318|GO:0018342
Vifa2g03489 689 Pfam Protein prenyltransferase alpha subunit repeat 121 148 IPR002088 GO:0008318|GO:0018342
Vifa2g03489 689 Pfam Protein prenyltransferase alpha subunit repeat 202 228 IPR002088 GO:0008318|GO:0018342
Vifa2g03489 689 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 84 118 IPR002088 GO:0008318|GO:0018342
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03489 Vifa-Chr2 1010433282 1010440169 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03489 K14050 - gmx:100807900 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03489 2 1010433282 1010440169 Vifa2g03489 2 1010433282 1010440169 ECH