Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03488 ATGGACACCAAAGAGAAACGCGCGATGATCCGCGACATCGGCTTACAAATCGTTATGATCCTCGCAATGATCTTAATCTTCCTCAGCATGCACGGTATTCCCCAGAAATTTCTCGCCAAACTCCGAATCCGCAACCGCACCGGCATCAAAGCCAAGCGTCACTTCGTAAGAGGCGCTCAGCTTCTCACACAAGCTAGATCTTCCAAAAACAAATCCAGATCCGCCATCAACAGCCTCGCCAACGAAGCTCTTGCCGAAGCCGAGAAAGCGATCGAACTCGATCCTAAAGACGCCGCTTCGTATCTTCTCAAAGCGATGGTTCTGGATCTTCAAGGCTTTAGAACCTCCGCTCTCGAGTCTCTTGACGCGGCGTTATCTCCTCTCGCTTCTGGTTCGCTTGCTGAGGGAGAACGTGGCGATGCGTTGTATAAGAGAGCGGAGCTGAAACTCGCGACGAGTGAACGCGGACGAGTTGACTCGGCGCTTGCGGATTTGAGTGAGTCCGTGATTTTGAGTCCGAAAAACGCGAAAGCTTGGTGTGCGTTGGGTGAGTGTTACGAAGGGAAGAAAATGGAGGAGGAAGCTAAGAAAGCGTACAAGGAGGCGCATGAGTTGGAGCCGCAGTTTTCTGTGCCGGTAGAAGCGCTTAACAGCAATGGAGCAACTGATGCAAAGCAGTCTTGA 684 0.5175 MDTKEKRAMIRDIGLQIVMILAMILIFLSMHGIPQKFLAKLRIRNRTGIKAKRHFVRGAQLLTQARSSKNKSRSAINSLANEALAEAEKAIELDPKDAASYLLKAMVLDLQGFRTSALESLDAALSPLASGSLAEGERGDALYKRAELKLATSERGRVDSALADLSESVILSPKNAKAWCALGECYEGKKMEEEAKKAYKEAHELEPQFSVPVEALNSNGATDAKQS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03488 227 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 81 211 - -
Vifa2g03488 227 Pfam Tetratricopeptide repeat 176 209 IPR001440 GO:0005515
Vifa2g03488 227 Gene3D Tetratricopeptide repeat domain 50 135 IPR011990 GO:0005515
Vifa2g03488 227 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Vifa2g03488 227 SUPERFAMILY TPR-like 81 211 IPR011990 GO:0005515
Vifa2g03488 227 Gene3D Tetratricopeptide repeat domain 139 226 IPR011990 GO:0005515
Vifa2g03488 227 SMART tpr_5 176 209 IPR019734 GO:0005515
Vifa2g03488 227 SMART tpr_5 139 175 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03488 - - gmx:100799725 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03488 2 1010429057 1010432659 Vifa2g03488 2 1010429057 1010432659 ECH