Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03468 ATGGCGAACCACATTCTCAGCACCTTCATACAACGCATCAGTTTTGTTTCGAGCGCACGAAATCTTTGGATCCAACCAGAATCTCGCGCTTCTGCCATTTCAGAGAAACAGAACCTGAAGAGCCTGATTTCTGGATTCAAATCTCCAAGTCGGAGTCCATTGCCGGTCCTTCAAAATTGGATCGACCAAGGTAACAAGCTTTCACCCACGGAACTGAGAGGCATCTCCAGAACCCTAATTAAATCCAAACGCTACAACCACGCATTCGAGGTGTTGAAGTGGATGGAAAACCAAAAACCATTCCGTCTGAATCCAGCTGATCATGCTATGAAAGTGGAGTTAATCATTAAGAATTATGGATTAATGGAAGCTGAGGAATATTTTATGAGTATAGGTGACTCAGCTGGAAAGAAAGCTGCCTATCTCCCACTTCTCCGTGGCTATGTAAAAGACAGGGACACCACTAAAGCCGAGACTTTCATGGAGAAGCTCTATGAACTGGGGCTAGTAGTGAATCCTCACCCTTATAATGAGATGATGAAACTATATCTTGCTACATGTGAGTACCGGAAGGTACCTCTTGTTATCCAGGAAATGAAACGGAATAAAGTACCCTGCAATGTTCTGTCCTACAACCTTTGGATGAATGGTTGTGATGAGGGAAAAGGATACGGAGTTGCAGCAGTGGAAACAGTTTTTAGAGCAATGCAAAATGATGAGAATGTTGAGGTGGGATGGAGCAGTCTTGCTACTTTAGCCAATGCTTATATGAAAGCAGGACAATCTGAGAAAGCCATTTTGGTTCTCAAAAATGCTGAAGAGAAACTATCTACTTGTGATCGTCTCGGTTACTTCTTCATCATAACATTATATGCCTCTTTGAAGCAAAAGGAAGGAGTTTTGCGGGTGTGGGAAGCCAGTAAGGCTGTTAGTGGAAGAATCAGTTGTGCTAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGACATAGCACAAGCCAAGAGAATCTTCAAAGAATGGGAGTCTAATTGTCTGAAATATGATATAAGAGTCTCTAATGTTCTTTTAGGTGCGTATGTGCGGAATGGATCAATTGAAGAAGCTGAATCATTACATCTTCACACATTGCAGAAGGGTGGTTGTCCAAACTACAAGACATGGGAGATTCTCATTGAAGGATATGTCAAGAGCCAAAAAATGGATGAGGCTATTATTGCCATGAAAAGAGCTTTGGCTATGTCTAAAGACTGTCATTGGAGGCTGTCACAAGGACTTGTATTAGCCATAGCTGAGTATTTGGAGAAATGTGGGAATTTTGAATACGCAAATGAGTACATCACAGATATTCATAATCTAGGTCTTGGAAATTTATCGTTGTACAAAATATTGCTTAGAATGCACCTTTCTGCTAAAAAACCACCTCTACACATCCTCAAAATGATCAATGAAGACAAAGTTGAGATGGATAGTGAGACATTTTCCATTTTTAAAGCCTTCACAGATAGGCTGAAGTGTTTGGAGGTGAAGCAGTAA 1539 0.4113 MANHILSTFIQRISFVSSARNLWIQPESRASAISEKQNLKSLISGFKSPSRSPLPVLQNWIDQGNKLSPTELRGISRTLIKSKRYNHAFEVLKWMENQKPFRLNPADHAMKVELIIKNYGLMEAEEYFMSIGDSAGKKAAYLPLLRGYVKDRDTTKAETFMEKLYELGLVVNPHPYNEMMKLYLATCEYRKVPLVIQEMKRNKVPCNVLSYNLWMNGCDEGKGYGVAAVETVFRAMQNDENVEVGWSSLATLANAYMKAGQSEKAILVLKNAEEKLSTCDRLGYFFIITLYASLKQKEGVLRVWEASKAVSGRISCANYICILTCLVKLGDIAQAKRIFKEWESNCLKYDIRVSNVLLGAYVRNGSIEEAESLHLHTLQKGGCPNYKTWEILIEGYVKSQKMDEAIIAMKRALAMSKDCHWRLSQGLVLAIAEYLEKCGNFEYANEYITDIHNLGLGNLSLYKILLRMHLSAKKPPLHILKMINEDKVEMDSETFSIFKAFTDRLKCLEVKQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03468 512 Gene3D Tetratricopeptide repeat domain 29 238 IPR011990 GO:0005515
Vifa2g03468 512 Pfam PPR repeat 355 374 IPR002885 -
Vifa2g03468 512 Pfam PPR repeat 388 406 IPR002885 -
Vifa2g03468 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Vifa2g03468 512 Gene3D Tetratricopeptide repeat domain 248 427 IPR011990 GO:0005515
Vifa2g03468 512 PANTHER OS12G0527900 PROTEIN 31 488 - -
Vifa2g03468 512 Pfam Pentatricopeptide repeat domain 163 218 IPR002885 -
Vifa2g03468 512 SUPERFAMILY TPR-like 161 444 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03468 Vifa-Chr2 1003780734 1003782577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03468 43 438 EF-hand Containing Proteins AT1G02150 33.501 3.87e-78 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03468 - - gmx:100803685 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03468 2 1003780734 1003782577 Vifa2g03468 2 1003780734 1003782577 ECH