Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03462 ATGGGGAGCATCGATAGAGCCAATGATATTGACAACACTCTTATCCAATCTCTGTTGCAAAAACAGGTTTCAGAGGAAGAAGAAGAAATATTTGGGAAGAAGCTATGGATTGAAACGAAGAAATTATGGATGATAGTGGGTCCCGCTATCTTGAGCAGCATCGCATCATTCACCATGAACGTGGTTAGTCAAGCCTTCGCCGGACACCTAGGTGAAGTTCAACTCGCCTCCATCACCATCGCCAACACTGTCATCGTTGGCTTCAACTTTGGCCTCCTCTTGGGAATGGCAAGCGCGTTGGAGACACTTTGTGGACAAGCGTTTGGCGCAAAACGACATAACATGTTAGGAATATATCTGCAAAGATCATGGATTGTTCTCTTCGTATGTTGTTTTCTTCTGTTGCCTTTCTATGTCTTTGCTACTCCATTTCTGAAACTCATAGGACAACCTCATGAGGTGGCGGAATCGAGTGGTATCGTAGCTATATGGCTTATACCATTGCATTTCAGTTTTGCGTTTCAGTTTCCTCTTCAGAGGTTTCTACAGTGCCAGCTGAAAACAGGTGTGATTGCATGGGTATCTTTGTTGGGTTTAGTGGTGAATGTTGTATTGAGTTGGTTGTTGGTTTATGTTTGGGATTTTGGGCTTATTGGTGCTGCAATAGCTTTGGATGTTTCATGGTGGGTATTGGTAATTGGGATGTTTGGGTACACAGTTTGTGGGGGTTGTCCTTTGACTTGGAATGGTTTTTCAATGGAAGCATTTTGTGGCCTTTGGGAATTCTTCAAACTGTCATTAGCTTCAGGGGTGATGCTTTGTTTAGAGAATTGGTATTACAGGATACTGCTGCTTATGACAGGTCAGTTGGAAAATGCAACAGTTGCTGTTGATGCATTGTCTGTATGTATGACTATCAATGGATGGGAAATGATGATTCCTCTTGCCTTCTTTGCCGGTATCGGGGTGCGGGTGGCAAACGAACTTGGAGCAGGAAAAGGAAAATCAGCCAAATTTGCAATGCAAGTATCAGTGATACAATCAACAGTGGTTGGATTAATCTTGTGTGTTCTAATAATGATATTTCAAAGACAATTTGCATACATTTTCACCTCGAGTCCTTCTGTTCTTCAAGCTGTTAACGATATGTCAATTCTCTTGGCAGTCACCATTCTTCTCAATAGCATTCAACCTGTTCTATCAGGTGTAGCTGTTGGTTCGGGATGGCAAGTATTTGTGGCATACGTAAATATTGGATGCTACTATCTAATTGGGCTACCACTTGGAATTATCATGGGATGGGTTTTCAACACTGGTGTTCAAGGCATATGGGGTGGGATGATATTTGGTGGTACATTAATTCAAACATTGATACTCATCATAATAATAGTACGGTGTGATTGGAAAAAAGAGGCAGAGAAGGCTGGCTCACGTGTAAACAAGTGGTCTGTAATAAGACCTAATGACCAATTGCAGATTAGTGATTAG 1488 0.4187 MGSIDRANDIDNTLIQSLLQKQVSEEEEEIFGKKLWIETKKLWMIVGPAILSSIASFTMNVVSQAFAGHLGEVQLASITIANTVIVGFNFGLLLGMASALETLCGQAFGAKRHNMLGIYLQRSWIVLFVCCFLLLPFYVFATPFLKLIGQPHEVAESSGIVAIWLIPLHFSFAFQFPLQRFLQCQLKTGVIAWVSLLGLVVNVVLSWLLVYVWDFGLIGAAIALDVSWWVLVIGMFGYTVCGGCPLTWNGFSMEAFCGLWEFFKLSLASGVMLCLENWYYRILLLMTGQLENATVAVDALSVCMTINGWEMMIPLAFFAGIGVRVANELGAGKGKSAKFAMQVSVIQSTVVGLILCVLIMIFQRQFAYIFTSSPSVLQAVNDMSILLAVTILLNSIQPVLSGVAVGSGWQVFVAYVNIGCYYLIGLPLGIIMGWVFNTGVQGIWGGMIFGGTLIQTLILIIIIVRCDWKKEAEKAGSRVNKWSVIRPNDQLQISD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03462 495 CDD MATE_eukaryotic 38 474 IPR045069 GO:0042910|GO:1990961
Vifa2g03462 495 Pfam MatE 270 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa2g03462 495 Pfam MatE 48 208 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa2g03462 495 NCBIfam MATE family efflux transporter 48 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa2g03462 495 PANTHER MULTIDRUG RESISTANCE PROTEIN 33 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03462 Vifa-Chr2 1000341303 1000343731 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03462 K03327 - gmx:100500204 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03462 2 1000341303 1000343731 Vifa2g03462 2 1000341303 1000343731 ECH