Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g03423 | ATGGGAGAGGAAGAAAAGAAAACTGAGGAAGAAGAAACCAAGGCGGAGGAAACAAAAGATGAAGCTGCTGCTGCTGCTCCTCCGCCGCCGGCAGAGATTTTGCTGAAAGTGTTTATGCATTGTGAAGGCTGTGCTCGGAAAGTTCGTCGGTGTTTGAAGAATTTTCCAGGAGTTGAAGGTGTGATAACTGACTGCAAAACTCATGAAGTTGTTGTGAAAGGTGAGAAAGCGGATCCAGTGAAGGTTGTGGAGAGAATTCAGATGAAGAGTCGTAGGAAGGTTGAGCTTGTTTCTCCGATTCCAAGTCCACCTGAGGAGGAAAAAGTTGCTGAGGAAGAAGAGAAACCAGCACCACCTGAACAGGAGAAGAAAGAAGAGCCTCAAATTGTGCAGCCTGAGATTGTAACGTCTGTTCTTAAAGTTCACATGCATTGTGAAGCTTGTGCAGAAGAGATAAAAAAACGCATACTCAAAATGAAGGGAGTGGAATCGGTGGAAACTGATCTAGAGAAGATGGAGGTAACCGTGAAGGGAGTGTATGATCCAGCAACGTTGGTTGAATATGTGCACAAGCGATTTGGGAAGCAAGCTATGATTGTGAATGAAGAGAAAGTGGATGAAGAAGCGAAAGCGAAGGAAGAGAAAAACGAAGAGAAGAGTGAAGAAGTGGAGGAGAAGAAAGAAGAAATAGAGAATAAGGCCAAACCAGAAGAGAATCCAGAAGGGGAAATTGTTGTACAAGAGACAAAAGTGGAAGAGGAGATGAAGAAAAATGAATACTACTATAATCCACCAATGGATTTGTATGCACAACCACCTATAGCTTATCCTGCATGTCATTCATACTATCAAACATACCTTCCACCAGCACCGCAGATCTTCAGCGATGAGAATCCAAATGCTTGCACTGTTATGTGA | 918 | 0.4336 | MGEEEKKTEEEETKAEETKDEAAAAAPPPPAEILLKVFMHCEGCARKVRRCLKNFPGVEGVITDCKTHEVVVKGEKADPVKVVERIQMKSRRKVELVSPIPSPPEEEKVAEEEEKPAPPEQEKKEEPQIVQPEIVTSVLKVHMHCEACAEEIKKRILKMKGVESVETDLEKMEVTVKGVYDPATLVEYVHKRFGKQAMIVNEEKVDEEAKAKEEKNEEKSEEVEEKKEEIENKAKPEENPEGEIVVQETKVEEEMKKNEYYYNPPMDLYAQPPIAYPACHSYYQTYLPPAPQIFSDENPNACTVM | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g03423 | 305 | SUPERFAMILY | HMA, heavy metal-associated domain | 33 | 87 | IPR036163 | GO:0046872 | |
| Vifa2g03423 | 305 | MobiDBLite | consensus disorder prediction | 93 | 129 | - | - | |
| Vifa2g03423 | 305 | Pfam | Heavy-metal-associated domain | 139 | 191 | IPR006121 | GO:0046872 | |
| Vifa2g03423 | 305 | Pfam | Heavy-metal-associated domain | 36 | 87 | IPR006121 | GO:0046872 | |
| Vifa2g03423 | 305 | Coils | Coil | 1 | 21 | - | - | |
| Vifa2g03423 | 305 | ProSiteProfiles | Heavy-metal-associated domain profile. | 134 | 201 | IPR006121 | GO:0046872 | |
| Vifa2g03423 | 305 | CDD | HMA | 39 | 95 | IPR006121 | GO:0046872 | |
| Vifa2g03423 | 305 | CDD | HMA | 138 | 197 | IPR006121 | GO:0046872 | |
| Vifa2g03423 | 305 | Coils | Coil | 197 | 233 | - | - | |
| Vifa2g03423 | 305 | Gene3D | - | 132 | 199 | - | - | |
| Vifa2g03423 | 305 | ProSiteProfiles | Heavy-metal-associated domain profile. | 30 | 94 | IPR006121 | GO:0046872 | |
| Vifa2g03423 | 305 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Vifa2g03423 | 305 | MobiDBLite | consensus disorder prediction | 207 | 250 | - | - | |
| Vifa2g03423 | 305 | MobiDBLite | consensus disorder prediction | 105 | 129 | - | - | |
| Vifa2g03423 | 305 | Gene3D | - | 30 | 101 | - | - | |
| Vifa2g03423 | 305 | PANTHER | HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 | 12 | 305 | IPR044577 | GO:0046872 | |
| Vifa2g03423 | 305 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Vifa2g03423 | 305 | SUPERFAMILY | HMA, heavy metal-associated domain | 130 | 203 | IPR036163 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g03423 | Vifa-Chr2 | 988385775 | 988387107 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g03423 | - | - | mtr:11419966 | 294.278 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa2g03423 | 2 | 988385775 | 988387107 | Vifa2g03423 | 2 | 988385775 | 988387107 | ECH | |
| Vifa2g03423 | 2 | 988385775 | 988387107 | Vifa2g03423 | 2 | 988385775 | 988387107 | PCT |