Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03403 ATGCATCCTCCGGCGCCGGTGAACTCCACCGGTGAAACTCCCGGAAACACTATCGATCCTTCACTCATCAGAACTTATCGTGCTTGGAAAGGCAATAACGTATTTTTTCTTGGAGGAAGGTTAATATTTGGACCTGATGTGAAATCTATAATTACAACACTGTTTCTCGTCGTTGCTCCTGTTGCTGTTTTCTGTGCTTTTGTAGCAAGAAAATTGATGAATGATTTTCCTCATCACTATGGATATTCAATATTGATTCTAGTTATTCTTCACACAATCTTTGTTCTGATTGCGCTTGTACTGACCTCAGGAAGAGATCCGGGCATAGTGCCTCGTAATTCTTATCCTCCAGTGCCGGAAGATTATGATGGAAGTGTTAGTATCAACAGTGTCGGTGAGCCTAATCTACCGGCGCATTTACCACGATTCAAGGAAGTGATTATCAATGGAACAACTGTTAAAGTGAAATATTGTGATACTTGTATGCTGTATAGACCTCCACGATGTTCTCATTGTTCGGTATGTGATAATTGTGTGGAGCGGTTTGATCATCATTGCCCGTGGGTGGGTCAGTGTATTGGACTGAGAAATTATCGATTCTACTACATGTTTGTTTTCTCTGCAACGCTTCTTTGCTTATATGTTCATGGATTTTGCTGGGTCTACATCAAGAGGATCCAGGACTCAGAGGACATATCAATTTGGAAAGCAATGATCAAAACCCCTGCTTCCATTGCGCTAATAATATACTCTTTCATTGCTGTCTGGTTCGTTGGAGGGCTCACTGTTTTTCATGCATATCTAATCAGCACAAACCAGTCTACTTATGAGAATTTTAGATACCGGTATGATCGACAAGTCAACCCTTACAACAAAGGTGTAATTGAGAACTTCAAAGAAGTCTTCTTCTCTTCCATTCCACCATCCAAAAACAATTTCAGGTCTAAAGTTCCAGTTCCTAAAGAACTGTCGGAATCATCAAGAAGAAATGGTGTTGATACTGTTATGATTCCAGCTTACAATGAGGTTGATGATATGGAAAAACATTACAAAGATGAGGAATATGGAAAGGGTGGTGATTTAAGTGAAACATCTGTGGATTTAAGCAGGATGCTTCACACCGAAAGAGGGCAGAGGGAAGTTGCTTCCTTTCTAAAGCACTCGTTGTGGGAACGAAGTAGCAAAAAGTGGGAAGTAAATCCTGAAATTCTCGACGATATACACGATACGGAATCAAATCGGATCACTGGTGATAGTAGTAATAAGACTGGTGACAACTCAGCAAAAACATCTACACTTGCAGAAAAACTCAGAGAAGAAAATTAA 1326 0.402 MHPPAPVNSTGETPGNTIDPSLIRTYRAWKGNNVFFLGGRLIFGPDVKSIITTLFLVVAPVAVFCAFVARKLMNDFPHHYGYSILILVILHTIFVLIALVLTSGRDPGIVPRNSYPPVPEDYDGSVSINSVGEPNLPAHLPRFKEVIINGTTVKVKYCDTCMLYRPPRCSHCSVCDNCVERFDHHCPWVGQCIGLRNYRFYYMFVFSATLLCLYVHGFCWVYIKRIQDSEDISIWKAMIKTPASIALIIYSFIAVWFVGGLTVFHAYLISTNQSTYENFRYRYDRQVNPYNKGVIENFKEVFFSSIPPSKNNFRSKVPVPKELSESSRRNGVDTVMIPAYNEVDDMEKHYKDEEYGKGGDLSETSVDLSRMLHTERGQREVASFLKHSLWERSSKKWEVNPEILDDIHDTESNRITGDSSNKTGDNSAKTSTLAEKLREEN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03403 441 MobiDBLite consensus disorder prediction 410 441 - -
Vifa2g03403 441 Pfam DHHC palmitoyltransferase 155 280 IPR001594 GO:0016409
Vifa2g03403 441 MobiDBLite consensus disorder prediction 416 431 - -
Vifa2g03403 441 ProSiteProfiles DHHC domain profile. 156 206 - -
Vifa2g03403 441 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 56 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03403 Vifa-Chr2 980031632 980033617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03403 83 328 Lipid Metabolism Gene Families AT4G22750 27.675 3.19e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03403 - - tpra:123917993 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03403 2 980031632 980033617 Vifa2g03403 2 980031632 980033617 ECH