Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03375 ATGGCTAGAGTTTTGGCTCAGTCACTTAGTGTTCCTGGCCTAGTGGCTGGGCACAAGCAGAGTCAACATAAGGGATCGGGAAAGTCTAAGCGATCAGTCAAGATGATGTGTGCTTTGCAAACAAGCGGATCAAGAATGTCAGGTTTCTCGGGACTTTGTAATTTCAATACTATGCTGAGACCTGGACTAGATTTTCGCTCCAAGGTATCATTGGCAACTTCTTCACGGAGGGCGAGGGCTAAGAGATTCATACCTAGAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATAATGTTGGCTCAGGAGGAAGCCAGACGTCTTGGTCATAATTTTGTTGGAACAGAGCAGATTCTTTTGGGGCTTATTGGTGAAGGAACTGGTATCGCTGCCAAGGTTTTGAAGTCTATGGGAATCAACCTTAAAGATGCACGTGTTGAAGTCGAGAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTCGAGATTCCATTTACTCCTCGTGCAAAGCGTGTATTGGAACTTTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCAGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGCGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTTACTGCTACTGTTGGCTCAGGAAGTAGTAACAATAAAATGCCAACTTTGGAGGAGTATGGAACCAATTTGACCAAGCTAGCAGAAGAGGGAAAGTTGGATCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTCACCCAAATTTTAGGCCGCCGCACCAAAAATAATCCTTGTCTTATTGGAGAGCCCGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATCGCTAATGGTGATGTACCTGAAACAATCGAAGGAAAAAAGGTCATAACCCTCGACATGGGTCTGCTTGTAGCTGGAACCAAATACCGTGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGTGCTATTGATGCTGCTAACATACTAAAGCCAGCTCTTGCAAGAGGTGAACTACAGTGTATTGGAGCCACAACATTGGATGAATACAGGAAGCACATTGAAAAAGACCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTACCAGAACCAACTGTAGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGTTATGAGATTCACCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCGCAACTTTCGTACCAGTATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCACGAGTCCGTCTTCAACATGCACAGTTGCCAGAAGAGGCAAAAGAACTTGACAAGGAGGTAAGGAAGATTGTTAAGGAGAAAGAGGAATCTGTTCGCAATCAAGACTTTGAAAAGGCCGGAGAACTGCGTGATAAAGAAATGGATCTCAAGGCGCAGATTTCAGCACTTATAGAGAAAGGCAAGGAGATGAGCAAAGCAGAGACTGAGACCGCAGATGAAGGTCCTATTGTGACTGAAGTTGACATTCAACATATTGTGTCCTCCTGGACAGGCATTCCTGTTGATAAAGTCTCAGCAGATGAATCTGACCGTCTCCTCAAGATGGAAGATACTTTACACAAGCGAATCATTGGTCAGGATGAAGCAGTGAAAGCCATTTGTCGGGCTATCCGTCGAGCCCGAGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTACTTTGGCTCTGAAGAAGCCATGATTCGTCTTGACATGAGTGAATTTATGGAAAGGCACACCGTCTCCAAACTTATTGGTTCACCTCCAGGATATGTTGGTTACACCGAAGGCGGTCAATTGACTGAAGCAGTTCGGCGTCGTCCTTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAAATCCTTGAAGATGGAAGACTAACAGACAGCAAGGGCAGAACTGTGGATTTCAAGAACACACTTCTCATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCCGAATTGGATTTGATTTGGATTACGATGAGAAAGATAGTAGTTATAATAGAATCAAGAGCTTGGTAACTGAGGAGCTAAAACAATACTTCAGGCCAGAGTTTTTGAATAGGTTGGATGAAATGATTGTTTTCAGACAACTCACAAAATTGGAAGTGAAGGAGATAGCAGACATAATGCTCAAGGAGGTGTTTCAGAGACTGAAGGTCAAAGAAATTGAACTTCAAGTAACAGAAAGATTTAGGGACAGGGTGGTTGATGAAGGCTATAATCCTAGTTACGGAGCTAGGCCTCTAAGAAGAGCCATCATGCGACTTTTGGAGGATAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGTGATTCTGTCATAGTGGATGTTGATTCTGATGGTAATGTGATTGTTCTCAACGGTAGCAGCGGTACTCCAGAGTCGTTACCAGAGGCTCTTTCTATATAA 2682 0.4459 MARVLAQSLSVPGLVAGHKQSQHKGSGKSKRSVKMMCALQTSGSRMSGFSGLCNFNTMLRPGLDFRSKVSLATSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEAKELDKEVRKIVKEKEESVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVKAICRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGTPESLPEALSI 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03375 893 SMART AAA_5 606 787 IPR003593 GO:0016887
Vifa2g03375 893 SMART AAA_5 289 575 IPR003593 GO:0016887
Vifa2g03375 893 Gene3D - 786 883 - -
Vifa2g03375 893 Pfam AAA domain (Cdc48 subfamily) 605 779 IPR003959 GO:0005524|GO:0016887
Vifa2g03375 893 FunFam ATP-dependent Clp protease ATP-binding subunit 407 492 - -
Vifa2g03375 893 Gene3D - 344 411 IPR027417 -
Vifa2g03375 893 SUPERFAMILY Double Clp-N motif 90 231 IPR036628 -
Vifa2g03375 893 ProSitePatterns Chaperonins clpA/B signature 2. 640 658 IPR028299 -
Vifa2g03375 893 Pfam AAA lid domain 406 508 IPR041546 -
Vifa2g03375 893 ProSitePatterns Chaperonins clpA/B signature 1. 358 370 IPR018368 GO:0005524
Vifa2g03375 893 Pfam Clp amino terminal domain, pathogenicity island component 179 230 IPR004176 -
Vifa2g03375 893 Pfam Clp amino terminal domain, pathogenicity island component 103 155 IPR004176 -
Vifa2g03375 893 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 88 236 - -
Vifa2g03375 893 FunFam ATP-dependent chaperone ClpB 786 879 - -
Vifa2g03375 893 Gene3D - 412 552 - -
Vifa2g03375 893 Gene3D - 88 237 IPR036628 -
Vifa2g03375 893 ProSiteProfiles UVR domain profile. 480 515 IPR001943 GO:0005515
Vifa2g03375 893 CDD AAA 272 398 - -
Vifa2g03375 893 CDD RecA-like_ClpB_Hsp104-like 567 783 - -
Vifa2g03375 893 Pfam C-terminal, D2-small domain, of ClpB protein 786 866 IPR019489 -
Vifa2g03375 893 ProSiteProfiles Clp repeat (R) domain profile. 89 231 IPR004176 -
Vifa2g03375 893 Gene3D - 558 784 IPR027417 -
Vifa2g03375 893 FunFam ATP-dependent Clp protease subunit 559 784 - -
Vifa2g03375 893 SMART ClpB_D2_small_2 786 876 IPR019489 -
Vifa2g03375 893 Gene3D UVR domain 472 536 - -
Vifa2g03375 893 Coils Coil 476 496 - -
Vifa2g03375 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 500 IPR027417 -
Vifa2g03375 893 Gene3D - 239 343 IPR027417 -
Vifa2g03375 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 873 IPR027417 -
Vifa2g03375 893 PANTHER ATP-DEPENDENT CLP PROTEASE 93 873 - -
Vifa2g03375 893 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 610 628 IPR001270 GO:0005524
Vifa2g03375 893 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 717 731 IPR001270 GO:0005524
Vifa2g03375 893 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 655 673 IPR001270 GO:0005524
Vifa2g03375 893 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03375 Vifa-Chr2 971791020 971796964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03375 K03696 - gmx:100804035 1577.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03375 2 971791020 971796964 Vifa2g03375 2 971791020 971796964 ECH
Vifa2g03375 2 971791020 971796964 Vifa2g03375 2 971791020 971796964 PCT