Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03369 ATGTATAGTGGTCTCAATGTTCACTTGGTTCCTCACACTCACGATGATGTTGGATGGTTGAAAACCGTTGATCAGTACTATGTCGGTTCCAACAACTCCATTCAGGGAGCTTGCGTTCAAAATGTGCTTGATTCCCTTATACCGGCTTTGTTGGCAAATAGGAATCGTAAATTCATCTATGTTGAACAGGCATTCTTCCAGCGTTGGTGGAGAGAGCAGAGTGAATTTGTTCAGAAAACAGTCAAGCAGCTGGTCAAATCTGGTCAATTGGAGTTCATAAATGGTGGTATGTGTATGCATGATGAGGCTGCTACACATTACATTGACATGATTGATCAGACAACCCTTGGACATCGATTTATCAAACAAGAATTCGGCGTTACTCCGAGAATTGGATGGCAAATCGATCCGTTTGGACATTCTGCTGTGCAGGCCTATTTGTTGGGAGCAGAGGTTGGATTTGATTCTTTATTCTTTGGACGGATCGACTACCAAGATCGAGCGAAGAGAAAGGGTGAAAAAAGCCTTGAGGTTGTGTGGCAGGGCTCTAAGAGCTTTGGTTCATCTGCACAGATATTTTCTGGCGCGTTCCCCGAGAATTATGAACCTCCAACAAGTAATTTCTACTTTGAAGTAAATGACGCATCTCCAATTGTTCAGGATGATATCGATTTGTTCGATTACAATGTCCCTGATCGAGTAAATGATTTTGTCGCAGCTGCAATATCACAGGCCAATATAACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCAGAAACCTGGTTTAGGCAACTAGACAAGTTTATTCACTATGTTAATCAGGATGGACGGGTTCATGCGTTATACTCGACCCCATCAATATATACCGATGCAAAACATGCTGCAAATGAAGCCTGGCCAATCAAGACCGATGACTTCTTTCCGTATGCAGATCGTGTAAATGGTTACTGGACGGGGTATTTTACAAGTAGGCCAGCCCTCAAAGGTTATGTTAGATTTACAAGTGGCTACTACTTGGCAGCAAGGCAGTTGGAGTATTTCAAAGGGAAGAGTTCCTCAAGTCCTAATACTGACTCTTTGGCTGATGCTTTGGCTATTGCTCAACACCATGATGCGGTATCTGGTACAGAAAAGCAGCATGTGGCTAATGATTATGCAAAACGGCTTTCAATAGGTTACACAGAGGCTGAGAAAGCTGTTGCTGCATCATTTGCTTTCTTGACAAAAGCAGCAAACAAAACCGATGGTAGGACTCCACAAATTAAATTTCAACAGTGTCCACTTCTTAACATAAGTTACTGTCCTGCATCAGAATCCGATTTCTCAGATGGGAAAGACCTGGTTGTCGTCGTTTATAATCCTCTTGGACGGAAAAGAGAGGATGTTATAAGGATTCCTGTTGCCAATGAAAATGTTGTTGTTCGGGATTCGAGTGGGAAAGAAATCCAATCCCAGCTTCTGCCAATACCTGATACTTTTCTTGGTTTAAGAAGCTACTACGCGAAAGCATACCTAGGAGTTTCTCCAAGTGTAAACCCAAAATATTGGCTTGCTTTTTCAGCCATTGTTCCCCCACTTGGTTTTAGCACTTACTATGTGTCCAAAGCTAAACAAGCAGCTACTATTTCAGATAGCCATAGAGAATATAGATCAGGGAGTCAAAGCGATACGTTTGAAGTAGGCCTAGGAAACTTGAAACTTATTTACTCTGGGAAGGAAGCGAAGCTTACTCAATATATCAACAGAAAAAGGAAGGTCAAAGAATCTATAGATCAGACATACAAGTTTTACGCCTCGTATGGAGATGACTTTACAGATGATGCTCAGGCATCTGGAGCATATATTTTTCGCCCCAACGGTTCATCAATTCCCATCCATTCCAACAAGAAGTCTCCTCTCACAGTTTTTCGGGGACCAATCGTGCATGAAGTGCATCAGAAGATCAATTCATGGATATACCAGACCACCAGATTATTCAAAGGAAAAGAACATGCTGAAGTTGAGTTTATTGTTGGGCCTATACCGATTGACAATGGAGTTGGCAAAGAAATTGCAACCGAGATTAAAACAAATCTAGCAAGCAGCAAAACCTTCTATACTGATTCTAATGGACGCGATTTCATTGAAAGGGTTCGAGACTATAGAAAAGACTGGAACTTAGAAGTAAATCAACCCGTTGCAGGAAATTATTACCCTATCAATCTTGGAATTTATCTAAAAGATAAACAAAGCGAGTTTTCTGTATTGGTAGATAGGTCTGTAGGGGGTTCGAGCATCCAAGATGGACATGTGGAGCTTATGGTTCATAGGAGGTTACTTAATGACGATTCTAGAGGTGTTGCAGAGGCCCTAAATGAAACAGTTTGCGTATCTGATAAGTGCGCAGGGTTAACAGTTTTAGGAAAGTACTATTTCAGAATTGATCCTGTTGGAGAGGGTGCTAGATGGCGTCGAACATTTGGTCAAGAAATATACTCACCATTGCTTTTAGCCTTCACAGAGAGCGAAGGTAACTGGGGAGATTCGCATGTCACAACATTCTCGGGATTAGATTCGTCATATGGCTTACCGGAAAATGTTGCAATAATAACTCTCCAGGCTCTTGGTAACGGAGAAGTTCTTCTTCGGCTAGCGCACTTATTTGAGATTGGTGAGGACGTGAATCTTTCGGTTAAGTCAAGCGTAGAACTCAAGAAAGTGTTCGGCAATAAACAGATAAACAAAGTAACTGAGGCGAGCTTATCAGCAAACCAAGAAAGAGCAGAAATGGAGAAGAAGAGATTAGTTTGGCAAGTTAAAGGATCATCTCCGGAACCGAAGGTGTCAAGGGGAGGACCTGTTGATCCAGAAAAGCTAATAGTAGAACTTGCTCCAATGGAAATAAGAACTTTCATTATCAATTTCAAGCACTAA 2937 0.4161 MYSGLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLANRNRKFIYVEQAFFQRWWREQSEFVQKTVKQLVKSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHRFIKQEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKGEKSLEVVWQGSKSFGSSAQIFSGAFPENYEPPTSNFYFEVNDASPIVQDDIDLFDYNVPDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYAETWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNGYWTGYFTSRPALKGYVRFTSGYYLAARQLEYFKGKSSSSPNTDSLADALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKAVAASFAFLTKAANKTDGRTPQIKFQQCPLLNISYCPASESDFSDGKDLVVVVYNPLGRKREDVIRIPVANENVVVRDSSGKEIQSQLLPIPDTFLGLRSYYAKAYLGVSPSVNPKYWLAFSAIVPPLGFSTYYVSKAKQAATISDSHREYRSGSQSDTFEVGLGNLKLIYSGKEAKLTQYINRKRKVKESIDQTYKFYASYGDDFTDDAQASGAYIFRPNGSSIPIHSNKKSPLTVFRGPIVHEVHQKINSWIYQTTRLFKGKEHAEVEFIVGPIPIDNGVGKEIATEIKTNLASSKTFYTDSNGRDFIERVRDYRKDWNLEVNQPVAGNYYPINLGIYLKDKQSEFSVLVDRSVGGSSIQDGHVELMVHRRLLNDDSRGVAEALNETVCVSDKCAGLTVLGKYYFRIDPVGEGARWRRTFGQEIYSPLLLAFTESEGNWGDSHVTTFSGLDSSYGLPENVAIITLQALGNGEVLLRLAHLFEIGEDVNLSVKSSVELKKVFGNKQINKVTEASLSANQERAEMEKKRLVWQVKGSSPEPKVSRGGPVDPEKLIVELAPMEIRTFIINFKH 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03369 978 FunFam Alpha-mannosidase 853 978 - -
Vifa2g03369 978 CDD GH38N_AMII_LAM_like 5 282 - -
Vifa2g03369 978 Coils Coil 914 934 - -
Vifa2g03369 978 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 867 973 IPR041147 -
Vifa2g03369 978 FunFam Alpha-mannosidase 567 834 - -
Vifa2g03369 978 FunFam Alpha-mannosidase 5 286 - -
Vifa2g03369 978 SUPERFAMILY Families 57/38 glycoside transferase middle domain 322 416 IPR028995 -
Vifa2g03369 978 Gene3D Glycoside hydrolase 38, N terminal domain 5 286 IPR027291 -
Vifa2g03369 978 Gene3D - 852 978 - -
Vifa2g03369 978 FunFam Alpha-mannosidase 285 365 - -
Vifa2g03369 978 SMART Alpha_mann_mid_2 323 397 IPR015341 GO:0004559|GO:0006013
Vifa2g03369 978 Pfam Alpha mannosidase middle domain 324 413 IPR015341 GO:0004559|GO:0006013
Vifa2g03369 978 SUPERFAMILY Glycoside hydrolase/deacetylase 5 319 IPR011330 GO:0005975
Vifa2g03369 978 Gene3D Glycoside hydrolase family 38, central domain 287 365 IPR037094 GO:0004559|GO:0006013
Vifa2g03369 978 Gene3D - 566 834 - -
Vifa2g03369 978 Pfam Glycosyl hydrolases family 38 N-terminal domain 6 318 IPR000602 GO:0004559|GO:0006013
Vifa2g03369 978 Gene3D Glycoside hydrolase family 38, central domain 366 422 IPR037094 GO:0004559|GO:0006013
Vifa2g03369 978 SUPERFAMILY Galactose mutarotase-like 428 976 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vifa2g03369 978 PANTHER ALPHA-MANNOSIDASE 4 978 - -
Vifa2g03369 978 Pfam Glycosyl hydrolases family 38 C-terminal domain 571 786 IPR011682 GO:0004559|GO:0006013
Vifa2g03369 978 Gene3D - 445 562 IPR013780 -
Vifa2g03369 978 FunFam Alpha-mannosidase 366 421 - -
Vifa2g03369 978 FunFam Alpha-mannosidase 443 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03369 Vifa-Chr2 970848448 970854333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03369 5 890 Glycoside Hydrolase AT5G13980 68.680 0.0 1288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03369 K01191 - gmx:100798150 1692.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03369 2 970848448 970854333 Vifa2g03369 2 970848448 970854333 ECH