Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03365 ATGGATCAAGAAGATAACGAAACCACGAGCAGGGAAGAGCAAGAAGAAGCATTGGTCGCTTTGATCGAACACCGAACTCACGAAGTTAGCTCTCTCCGTAAGCGTATCGCCTATTACAAAACTCAGCTTGATGGTGCGGAAGAGAGGTTGAAGGATTCAGAATCGAAATTGGCTCGATTACGAGGTCAAAGTAATTCAGTTAAATCTGTAACTAGAAATGTATCTAACTTAGATAATGGTGATAACGGTGATGGAGTTGTTGCTGTGAAGAAAGAGCGGAGATCAAATAGTCCTGTTGATAGGAATGAGCGTTCTTACAAAAGTAATAATAATAACCGTCAATCTAAAATTGAACTTGTTATTCCTACCGTTACTCCGAAGATTTCGCGGTCGTCTCGTAAAGAGCAGCAGGTTGTAGGGAATAAAAGGAAACTCGAAGTGAAAGAACACAAGGAATTGATTCCTTTATTACGTAAGAGTTCTATGGTGAATTTAATACACTGCGAAACAAGCAACCTTATCTCAAGTCAGCACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCTGTGAATGATCAGCTTTTTGTGACCAGTGCCTTGGACGGAGTGGTCAACTTCTGGCAAGTACAAGCTAGAGGATCAGGAGCCTCTCTGCTTAACTCTTCTGATTGTGCATCCCAAAAACAGAGGAGATGGCCAGAAGATATAGCTTGGCACCCGGAAGGGAGCAGGCTCTTTTCGGCATATACCGCTGACGGTGGAGACTCACAAATATCAGTTACAAATCTGAATAAAGTACAAGGGCAACGTCGTGTGAAATTCTTAGAGGACAAGCCCCATCTCAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAGATACATGCTTTGTAACTGGTGGAAGTGACCATGCTGTTGTACTTTGGCGTGAGCAGGATGATGAAGATAAATGGAAACCAAAACCATTGCACAGGAATCTTCATTCTTCTGCTGTCATGGGTGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTATCTGCAGGTGCAGACAAGAGAATATTTGGGTTTGATGTTGGTGTAGGAAGAGCTGATTTCAGTCATCAGATTGATAGTAAATGCATGAGTGTCGTTCCCAATCCATGTGACTTCAACTTGTTTATGGTTCAAACAGGGACTCACGAGAAGCAGCTTCGACTATTTGATATTAGATTGAGGCGGACAGAACTTCATGCTTTTGGGTGGAAGCAGGACAGCAGTGAATCCCAATCAGCTCTGATAAACCAGGCCTGGTCTCCTGACGGCCTTTATATAACATCTGGTTCGGCGGATCCTGTAATTCATATATTTGATATAAGATATAATATTAACAAGCCTTCCCAATCTATAAGAGCTCACAATAAACGAGTCTTCGGAGCCATGTGGCTTCAGTCTATTCCTCTTCTCATATCCATATCATCTGATCTCAACATTGGGTTGCACAAGATTTACTAG 1494 0.4237 MDQEDNETTSREEQEEALVALIEHRTHEVSSLRKRIAYYKTQLDGAEERLKDSESKLARLRGQSNSVKSVTRNVSNLDNGDNGDGVVAVKKERRSNSPVDRNERSYKSNNNNRQSKIELVIPTVTPKISRSSRKEQQVVGNKRKLEVKEHKELIPLLRKSSMVNLIHCETSNLISSQHKRKLRSIALCPVNDQLFVTSALDGVVNFWQVQARGSGASLLNSSDCASQKQRRWPEDIAWHPEGSRLFSAYTADGGDSQISVTNLNKVQGQRRVKFLEDKPHLKGIINGIVFMPWEDTCFVTGGSDHAVVLWREQDDEDKWKPKPLHRNLHSSAVMGVAGMQQKQIVLSAGADKRIFGFDVGVGRADFSHQIDSKCMSVVPNPCDFNLFMVQTGTHEKQLRLFDIRLRRTELHAFGWKQDSSESQSALINQAWSPDGLYITSGSADPVIHIFDIRYNINKPSQSIRAHNKRVFGAMWLQSIPLLISISSDLNIGLHKIY 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03365 497 SUPERFAMILY WD40 repeat-like 181 493 IPR036322 GO:0005515
Vifa2g03365 497 MobiDBLite consensus disorder prediction 85 101 - -
Vifa2g03365 497 MobiDBLite consensus disorder prediction 59 80 - -
Vifa2g03365 497 Pfam WD domain, G-beta repeat 428 451 IPR001680 GO:0005515
Vifa2g03365 497 Gene3D - 377 497 IPR015943 GO:0005515
Vifa2g03365 497 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 136 - -
Vifa2g03365 497 SMART WD40_4 320 358 IPR001680 GO:0005515
Vifa2g03365 497 SMART WD40_4 169 208 IPR001680 GO:0005515
Vifa2g03365 497 SMART WD40_4 268 311 IPR001680 GO:0005515
Vifa2g03365 497 SMART WD40_4 456 495 IPR001680 GO:0005515
Vifa2g03365 497 SMART WD40_4 406 451 IPR001680 GO:0005515
Vifa2g03365 497 Coils Coil 29 63 - -
Vifa2g03365 497 Gene3D - 158 376 IPR015943 GO:0005515
Vifa2g03365 497 MobiDBLite consensus disorder prediction 59 113 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03365 - - gmx:100799587 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03365 2 968571598 968578733 Vifa2g03365 2 968571598 968578733 ECH
Vifa2g03365 2 968571598 968578733 Vifa2g03365 2 968571598 968578733 PCT