Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03356 ATGGAAACTGTGAGCACTGAACCATCAAAACCAGAATTGGATTCCAATCAAGATGAAGCAAAAGCTCAAGTTGTTGTTGTTCAAGATGATGGAGCTTTGAAAGACAGCACAGAAGCAGAGCTCAAGAAAATCAGTCTCATGAGAACTTTTGTTGAAGCCCGCGACCCTTCTTCTAAGGAAGTAGATGATTTGATGATAAGAAGATTCTTGAGAGCTCGTGATTTAGATGTAGAGAAATCTTCAGCTATGTTCCTGAAGTACTTGAAATGGAAGCATTCATTTGTTCCAAATGGGTCTGTTTCGCCTTCGGAGATTCGTGGTGATCTTGCACAGGAGAAGATGTATGTTCAAGGAGTGGATAAAAAGGGTCGACCTATAACTGTTGCATTTGCTGCTAAACATTTTCAAAACAAAAATGGTTTGGAAGCATTCAAACGGTATGTAGTTTTTGCGCTTGAGAAACTATGTTCAAGGATGCCACCGGGGGAAGAAAAGTTTCTTGCTATTGCAGATATTAAGGGATGGGGATATGCAAACAGTGACCTTCGTGGATACCTTGGTGCTCTAACAATTCTGCAGGATTACTATCCAGAGAGATTGGGAAAATTGTTCATAGTTCATGCACCTTACATGTTTATGAAAGTATGGAAACTTGTATACCCTTTCATTGATGACAATACCAAGAAAAAGATAGTATTTGTGGATAACAAGAAGCTGAAATCGACATTGTTAGAAGAGATCGATGAGAGTCAGCTCCCGGAGATATATGGAGGCAAACTTCAACTAGTTCCAATACAGCATTCATGA 807 0.3953 METVSTEPSKPELDSNQDEAKAQVVVVQDDGALKDSTEAELKKISLMRTFVEARDPSSKEVDDLMIRRFLRARDLDVEKSSAMFLKYLKWKHSFVPNGSVSPSEIRGDLAQEKMYVQGVDKKGRPITVAFAAKHFQNKNGLEAFKRYVVFALEKLCSRMPPGEEKFLAIADIKGWGYANSDLRGYLGALTILQDYYPERLGKLFIVHAPYMFMKVWKLVYPFIDDNTKKKIVFVDNKKLKSTLLEEIDESQLPEIYGGKLQLVPIQHS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03356 268 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g03356 268 Pfam CRAL/TRIO domain 112 258 IPR001251 -
Vifa2g03356 268 SMART sec14_4 108 261 IPR001251 -
Vifa2g03356 268 Gene3D - 1 267 IPR036865 -
Vifa2g03356 268 SUPERFAMILY CRAL/TRIO domain 104 261 IPR036865 -
Vifa2g03356 268 CDD SEC14 115 259 IPR001251 -
Vifa2g03356 268 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 102 264 IPR001251 -
Vifa2g03356 268 PANTHER OS03G0850700 PROTEIN 34 267 - -
Vifa2g03356 268 SUPERFAMILY CRAL/TRIO N-terminal domain 32 97 IPR036273 -
Vifa2g03356 268 SMART CRAL_TRIO_N_2 62 87 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03356 Vifa-Chr2 964143309 964144870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03356 68 254 Acyl Lipid Metabolism Gene Families AT1G55840 26.667 7.71e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03356 - - gmx:100797666 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03356 2 964143309 964144870 Vifa2g03356 2 964143309 964144870 ECH
Vifa2g03356 2 964143309 964144870 Vifa2g03356 2 964143309 964144870 PCT