Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03320 ATGGCCGAGGAAGTTCCAAAGAAAACAACAATAGAAACAGTGCCTCTTGATGAGGAGCAAGTGCCTATTGTAGAGCCCGAGTCCGAGCCCAAGCCCAATCCAGAGCCTGAGGAAGAGCCGGTTGAAAACAAGATTGAAGAGAATGCTGCTGAGACGGACGCATCAAAGCCCGGTGGTGACGAGAAAATACCCGAGTCGGGCTCGTTCAAGGAAGAGACAACCATTGTTGGCGAACTACCCGAAGCTGAGAAGAAAGCACTTCAAGAGCTGAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCTTCAGATTCAACTCCTACTCCACCCGAAGAACAAAAGCCCGAATCCGCACCAGAAGCAGAATCACAACCACCTGCTGAAGAAAACAACAAGAAAGAAGAACAGAACAACGAACATGTTTCTGAAACAGAATCCGTTGTTGCTGTTTCAACCGCTGACGATGACGTGGCACCACCACCACCAACAACAACTGAAACTGAGAAAGCTAACGAAGGAGAAAAGAAAGAAGAAACCGAGGTGGCTTCTTCTTCTATAGACGACGACGGAGCAAAAACAGTTGAAGCTATTGAAGAAACCGTTGTAGCTGTCTCTTCATCGATTCCAGAAGAACCAAAAGTGGATGAAGCTTCTTCACAAGAACAACAACCACCAGAAGAAGTTTCAATATGGGGGATCCCACTGCTCTTAGACGACAGAACCGACGTGATTCTGTTAAAGTTTCTCCGAGCAAGAGACTTCAAAGTGAAAGAATCCTTCACAATGATCAAGAACACAATCCGTTGGAGAAAAGAGTTCAAAATCGAAGAACTGTTATTCGACGAAAACCTTAACAATGAGTATTTAGAAAAAACCGTTTACATGCATGGACACGACAAAGAAGGTCACCCTGTTTGTTACAACATTTATGGGGAATTCGATAACAAAGAAGTTTACAAGAAAGCATTTTCTGATGAAGAGAAGAGACAAAATTTTCTGAGATGGAGAATTCAGTTTCTGGAAAAGAGTATCAGAAAATTGAATTTTAACCCTGGTGGCATTTCCACCATTGTTCAGGTTAATGACCTTAAGAATTCTCCTGGACCTACCAAATGGGAGCTTAGGCAAGCTACCAAACAGGCCCTTCAATTGCTTCAAGATAATTATCCCGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTATTTGGCTGTAAACAGAATGATAAGTCCTTTTCTTACACAAAGAACAAAAAGCAAGTTTGTTTTTGCTGGACCTTCTAAATCAGCTGAAACACTTCTAAGATACATAGCTCCGGAGCAACTTCCGGTTAAGTATGGTGGATTAAGCAAAGACGGTGAATTCGGAATTACTGATGCTGTTACAGAAATTACAGTGAGGCCTGCGGCAAAACATACTGTGGAATTTCCAGTTAGTGAAAGTTGTTTACTCTCTTGGGAGGTAAGAGTAATTGGATGGGACATAAGCTATGGTGCAGAGTTTGTGCCAAGTTCAGAAGGAAGCTATATTGTGATAATCCAGAAGAGTAGAAAAGTTGGTTCATCAGAAGAACCAGTTATTTGCAACAACTACAAAATTGATGAACCTGGGAAAGTTGTTTTGACCATTGATAATTCAAGCTCTAAGAAGAAGAAACTCTTGTATCGTTTGAAGACCAAGCATTCAACTTCTGATTAG 1713 0.4162 MAEEVPKKTTIETVPLDEEQVPIVEPESEPKPNPEPEEEPVENKIEENAAETDASKPGGDEKIPESGSFKEETTIVGELPEAEKKALQELKQLIQEALNKHEFSSDSTPTPPEEQKPESAPEAESQPPAEENNKKEEQNNEHVSETESVVAVSTADDDVAPPPPTTTETEKANEGEKKEETEVASSSIDDDGAKTVEAIEETVVAVSSSIPEEPKVDEASSQEQQPPEEVSIWGIPLLLDDRTDVILLKFLRARDFKVKESFTMIKNTIRWRKEFKIEELLFDENLNNEYLEKTVYMHGHDKEGHPVCYNIYGEFDNKEVYKKAFSDEEKRQNFLRWRIQFLEKSIRKLNFNPGGISTIVQVNDLKNSPGPTKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVSESCLLSWEVRVIGWDISYGAEFVPSSEGSYIVIIQKSRKVGSSEEPVICNNYKIDEPGKVVLTIDNSSSKKKKLLYRLKTKHSTSD 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03320 570 MobiDBLite consensus disorder prediction 128 143 - -
Vifa2g03320 570 MobiDBLite consensus disorder prediction 1 81 - -
Vifa2g03320 570 Gene3D - 216 468 IPR036865 -
Vifa2g03320 570 Pfam CRAL/TRIO domain 294 453 IPR001251 -
Vifa2g03320 570 Pfam CRAL/TRIO, N-terminal domain 227 267 IPR011074 -
Vifa2g03320 570 PANTHER PATELLIN-1 31 566 IPR044834 GO:0008289
Vifa2g03320 570 MobiDBLite consensus disorder prediction 170 194 - -
Vifa2g03320 570 MobiDBLite consensus disorder prediction 206 228 - -
Vifa2g03320 570 Gene3D GOLD domain 469 564 - -
Vifa2g03320 570 ProSiteProfiles GOLD domain profile. 463 564 IPR009038 -
Vifa2g03320 570 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 465 563 IPR036598 -
Vifa2g03320 570 Coils Coil 87 107 - -
Vifa2g03320 570 MobiDBLite consensus disorder prediction 96 194 - -
Vifa2g03320 570 SUPERFAMILY CRAL/TRIO domain 294 456 IPR036865 -
Vifa2g03320 570 MobiDBLite consensus disorder prediction 30 68 - -
Vifa2g03320 570 SUPERFAMILY CRAL/TRIO N-terminal domain 74 283 IPR036273 -
Vifa2g03320 570 CDD SEC14 291 454 IPR001251 -
Vifa2g03320 570 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 283 459 IPR001251 -
Vifa2g03320 570 SMART CRAL_TRIO_N_2 243 268 IPR011074 -
Vifa2g03320 570 MobiDBLite consensus disorder prediction 98 113 - -
Vifa2g03320 570 SMART sec14_4 289 456 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03320 Vifa-Chr2 951569890 951571994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03320 247 448 Acyl Lipid Metabolism Gene Families AT5G47730 27.962 2.19e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03320 - - gmx:100805585 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03320 2 951569890 951571994 Vifa2g03320 2 951569890 951571994 ECH
Vifa2g03320 2 951569890 951571994 Vifa2g03320 2 951569890 951571994 PCT