Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03305 ATGGCAGCTGAGTTAGTTAACGCTGCAACAAGCGACAAATTATCTGAAACCGATTGGACAAAAAATATTGAAATATGTGAGTTGGTTGCACATGATAAAAGGCAAGCTAGAGATGTTGTTAAAGCTATCAAGAAGAAACTCGGAAGCAAACACCCAAACACTCAACTTTATGCTGTCACGTTGCTGGAAATGTTGATGAACAATACTGGAGAGCATGTTCGTGAGCAGGTGATTGATATCGGAATTATTCCTATTCTTGTGAAAATCGTGAAGAAAAAGTCTGATTTGCCTGTGAGAGAGAGGATATTTCTCCTACTAGATGCCACACAATCATCCCTTGGCGGTGCTTCTGGAAAATTTCCTCAGTATTATCATGCATATTATGATTTGGTGAATGCCGGAGTGCAGTTTCCTCAAAGTGCTCAAGTGGTCGAATCAAATCATGCTAGTTCACAACCTAGTAGGACTGGTAGTGAACCAAACAGGGAGCAGGCTTCACCTAGACATGAAGTGGTTGTACCACAAGCAGAGTCTAAGACAGTTCCTGAATCTAGCATTATTCAAAAGGCTGGTAATGCATTGGAAGTTTTGAAAGAAGTACTTGATGCTGTTGATGCTCAACATCCTCAGGGAGCAAGTGATGAATTCACCCTTGACCTTGTAGAACAATGTTCGTTTCAGAAGCAAAGGGTAATGCATCTTGTGATGGCTTCTCGAGATGAGAGGACAGTTTCTCGAGCAATTGAACTAAATGAACAGCTTCAGAAAGTTCTTGCAAGACACGATGACCTTGTTTCTGGTAGAACTACAACGTCGGCTAATGAACAGTTTCCAAAAGTTCTTCCAAGACGTGGTGATCTTGTTTCTGGCAGAGTTACAACGAATGCTAATGAACAACTTCCAAAAGTTCATCCAAAATGCGATGATGCTGTATCTGGCAGAGCTACAGCAACTGTTGCTACTCATTTCGACCTCGATGAATCAGAGGAGGAAGAAGAGCCTGAACAGTTAGTAAGAAGATTACGCAAAGGAAAGGCTTGTGCAAGACCTGAAGATGAAGAAACTGAAACTGACATCACTCGCATGCGAATGAATGGGGAGAGACTAAACCGTCCTTTAATACGGCCACTGTCCTCAGAGCCATCTCGAGAAGCTTACAATCCTGCTCCTCCACCGGCTTTAATCCCTCTTCCACGTCCAAAACAGAATGATGAGCTTCCACTTCCTCACGTGGCGATCCCACCACCACCTGCAAAACACGTTGAGAGGGAGAAATTTTTTCAGGAAAACAAGGATGCTTCTAATCTATCCGGCCACATGAGAGGTCTCTCTTTACATAGTCGTAACGGAAGCAGCTCTCGCAGTGGAAGCTTTGATTTTAGAGACTGA 1389 0.4312 MAAELVNAATSDKLSETDWTKNIEICELVAHDKRQARDVVKAIKKKLGSKHPNTQLYAVTLLEMLMNNTGEHVREQVIDIGIIPILVKIVKKKSDLPVRERIFLLLDATQSSLGGASGKFPQYYHAYYDLVNAGVQFPQSAQVVESNHASSQPSRTGSEPNREQASPRHEVVVPQAESKTVPESSIIQKAGNALEVLKEVLDAVDAQHPQGASDEFTLDLVEQCSFQKQRVMHLVMASRDERTVSRAIELNEQLQKVLARHDDLVSGRTTTSANEQFPKVLPRRGDLVSGRVTTNANEQLPKVHPKCDDAVSGRATATVATHFDLDESEEEEEPEQLVRRLRKGKACARPEDEETETDITRMRMNGERLNRPLIRPLSSEPSREAYNPAPPPALIPLPRPKQNDELPLPHVAIPPPPAKHVEREKFFQENKDASNLSGHMRGLSLHSRNGSSSRSGSFDFRD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03305 462 Pfam VHS domain 5 109 IPR002014 GO:0035091|GO:0043130
Vifa2g03305 462 MobiDBLite consensus disorder prediction 431 462 - -
Vifa2g03305 462 MobiDBLite consensus disorder prediction 142 161 - -
Vifa2g03305 462 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Vifa2g03305 462 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Vifa2g03305 462 MobiDBLite consensus disorder prediction 334 357 - -
Vifa2g03305 462 SUPERFAMILY GAT-like domain 146 268 - -
Vifa2g03305 462 MobiDBLite consensus disorder prediction 325 357 - -
Vifa2g03305 462 SUPERFAMILY ENTH/VHS domain 4 139 IPR008942 -
Vifa2g03305 462 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Vifa2g03305 462 MobiDBLite consensus disorder prediction 369 462 - -
Vifa2g03305 462 MobiDBLite consensus disorder prediction 142 177 - -
Vifa2g03305 462 CDD VHS 2 130 - -
Vifa2g03305 462 CDD GAT_GGA-like_plant 186 264 - -
Vifa2g03305 462 Gene3D - 2 136 IPR008942 -
Vifa2g03305 462 Gene3D - 177 275 IPR038425 -
Vifa2g03305 462 PANTHER TOM1-LIKE PROTEIN 1 446 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vifa2g03305 462 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03305 Vifa-Chr2 949761900 949766213 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03305 - - mtr:25489880 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03305 2 949761900 949766213 Vifa2g03305 2 949761900 949766213 ECH
Vifa2g03305 2 949761900 949766213 Vifa2g03305 2 949761900 949766213 PCT