Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03304 ATGAGTTCCTTTCACAACACAGAAAGAGACGATGAACCCGGTTCATCATCCATGAAGCAAATGGCACCAAACTTCCGCTCCCTCTCCACCTGCAACCGAATCGACCGCACCCCTTCGTCGAGCCGCGCGGTTCAACGATCAGCCTCTGCTAGATTGGCTCGTAAAAACTCCTCACGCGAGGTCATGCTAAATGATATAGTCGGTAACGGAATCTCCGGTATCTTGTATAAGTGGGTAAACTACGGCCGAGGGTGGAGGCCGAGGTGGTTTATCCTTCATGACGGTGTTTTATCTTATTACAAAATCCATGGTCCTGATAAGCTTATTCTTAACCGCGACGTCGAAAACCAATCAAAAGTCATCGGTGACGAGTCTATCCGCCGTATCGCCAGCAACCGCCATTGTCCCTCCCGTCGTCAAAATCCTGTCAGTGAAATCCACCTAATGGTGTGTTCGGTGCGAGAGAACAAGTCAGATGAAAGGAGGTTTTGCATATGCACCGGGACGAAGAAGAGAATACATTTAAGAGCAGAGAGTAAAGAGGATAGAACAATGTGGATGGAAGCAATGATGACAGTGAAAAACATGTATCCTCGGTTACCGCCCGCAACAGAAATCATGTCTCCTTCGGTTTCTGTTGTGATTTCTACTGATAAGTTGAGACAACGACTTTTGCAAGAAGGTGTTAATGAAGTTTCTATACGCGAATGTGAAGATATCATGAGAACGGAGTTGCTTCAATTGCATACATACATTGTTGCCCTTAAAAAGAAACAGCTAATACTCACAGACACACTCCGAAATTTAGAAACAGAGAAAGTTGATTTGGAGAACACATTAGTTGATGATCAAAGACAAACAAGAGATGAAGCGGATTCATATCTCTCGTCACATGAACATTATAGTGATGGAAGTGGAAGTGAATATTCTGATGAGCATGATAGGGACGATAACACAGATGACGAGCACGACGCATTCTTCGATACATACGAAATTCTTTCAACGAGTTCAATTAGAAGTAATGGATCATCTGATCATTTGAGATCCAACCAGGAATCTGAATATGAAGAGACATTTAGTTCAACAGAAAAATGTGATCCTAAATCGCCTACTGGGTCAAACTATCCTTATATCGAACGACGAAAGAAGTTACCTGATCCCATTGAGAAAGAAACTGGAGTTAGTTTATGGTCAATAATAAAAGACAATATCGGAAAAGACCTTACAAAAGTTTGTCTTCCAGTTTATTTTAATGAGCCAATCTCTTCATTACAGAAATGTTTTGAAGATTTGGAGTATTCTCACCTTCTAGATCAAGCTTATGAATGTAGTAAAATGGGTGACAATCTAATGAGGATACTATATGTGGCTGCATTTGCAGTTTCGGGGTATGCAAACACTAATGGTAGAAGTTGTAAACCATTTAATCCATTATTGGGTGAAACATATGAAGCTGATTATCCAGATAAAGGCATAAGATTCATCTCTGAGAAGGTGAGTCATCATCCTATGGTTGTAGCATGTCATTGCGAGGGTCGAGGTTGGAAATTTTGGGGTGATAGCAATCTAAAAAGTAAATTTTGGGGTCGTTCGATTCAGCTTGATCCTATCGGTTATTTAACCGTGGAGTTTGATGACGGAGAAGTCTTTTATTGGAGCAAAGTAACAACATCCATTTATAACCTAATTTTAGGAAAACTTTATTGTGATCATTACGGTACAATGAACATAGAGGGGAATCGTGAGTATTCGTGTAAGGTCAAATTCAAAGAGCAATCAATCATTGATAGAAACCCTCACCAGGTTCAAGGCATAGTTGAAGATAAGAATGGAAAAATAGCAGCAACTATATTTGGGAAGTGGGATGAGAGTTTGCATTATGTAATTGGAGCATATTCTGGAAAAGGAAAAAGGTCCAATGTGTCATCGAAACCGCAAATGTTGTGGAAGAGAAACCAATTACCAGAGCAACAAACAAGATACAATTTTACAGAATTTGCACTTACATTAAATGAAATCATACCTGGTTTAAAGGAGAAGTTGCCACCAACAGATTCAAGGCTAAGACCTGATCAAAGATATTTGGAGAATGGAGAATATGAAATGGCCAATTCTGAGAAAATGAGGTTGGAAAAAAGACAAAGACAGGCGAGAGATATGCAAGAGACTGGTTGGAAACCAAGGTGGTTTGCTAAGGAAAATAATAGTAAGAGTTATAAATATGTTGGTGGATATTGGGAGACTAGAGAAAAGGGAAAATGGGACAATTATGTTGATATTTTTGGCCAAATCTGA 2295 0.3978 MSSFHNTERDDEPGSSSMKQMAPNFRSLSTCNRIDRTPSSSRAVQRSASARLARKNSSREVMLNDIVGNGISGILYKWVNYGRGWRPRWFILHDGVLSYYKIHGPDKLILNRDVENQSKVIGDESIRRIASNRHCPSRRQNPVSEIHLMVCSVRENKSDERRFCICTGTKKRIHLRAESKEDRTMWMEAMMTVKNMYPRLPPATEIMSPSVSVVISTDKLRQRLLQEGVNEVSIRECEDIMRTELLQLHTYIVALKKKQLILTDTLRNLETEKVDLENTLVDDQRQTRDEADSYLSSHEHYSDGSGSEYSDEHDRDDNTDDEHDAFFDTYEILSTSSIRSNGSSDHLRSNQESEYEETFSSTEKCDPKSPTGSNYPYIERRKKLPDPIEKETGVSLWSIIKDNIGKDLTKVCLPVYFNEPISSLQKCFEDLEYSHLLDQAYECSKMGDNLMRILYVAAFAVSGYANTNGRSCKPFNPLLGETYEADYPDKGIRFISEKVSHHPMVVACHCEGRGWKFWGDSNLKSKFWGRSIQLDPIGYLTVEFDDGEVFYWSKVTTSIYNLILGKLYCDHYGTMNIEGNREYSCKVKFKEQSIIDRNPHQVQGIVEDKNGKIAATIFGKWDESLHYVIGAYSGKGKRSNVSSKPQMLWKRNQLPEQQTRYNFTEFALTLNEIIPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKMRLEKRQRQARDMQETGWKPRWFAKENNSKSYKYVGGYWETREKGKWDNYVDIFGQI 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03304 764 Coils Coil 266 286 - -
Vifa2g03304 764 Pfam Pleckstrin homology domain 76 191 - -
Vifa2g03304 764 MobiDBLite consensus disorder prediction 1 15 - -
Vifa2g03304 764 Coils Coil 700 720 - -
Vifa2g03304 764 Gene3D - 69 197 IPR011993 -
Vifa2g03304 764 Gene3D - 481 664 - -
Vifa2g03304 764 MobiDBLite consensus disorder prediction 338 378 - -
Vifa2g03304 764 ProSiteProfiles PH domain profile. 68 195 IPR001849 -
Vifa2g03304 764 MobiDBLite consensus disorder prediction 281 297 - -
Vifa2g03304 764 SMART PH_update 69 197 IPR001849 -
Vifa2g03304 764 SUPERFAMILY Oxysterol-binding protein-like 390 761 IPR037239 -
Vifa2g03304 764 Gene3D - 692 757 - -
Vifa2g03304 764 MobiDBLite consensus disorder prediction 281 322 - -
Vifa2g03304 764 MobiDBLite consensus disorder prediction 1 51 - -
Vifa2g03304 764 FunFam oxysterol-binding protein-related protein 1D isoform X1 481 653 - -
Vifa2g03304 764 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 70 749 IPR000648 GO:0008289
Vifa2g03304 764 MobiDBLite consensus disorder prediction 349 363 - -
Vifa2g03304 764 Pfam Oxysterol-binding protein 395 750 IPR000648 GO:0008289
Vifa2g03304 764 SUPERFAMILY PH domain-like 71 210 - -
Vifa2g03304 764 MobiDBLite consensus disorder prediction 17 51 - -
Vifa2g03304 764 FunFam Oxysterol-binding protein-related protein 2A 692 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03304 Vifa-Chr2 949519327 949522813 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03304 K20456 - gmx:100781218 1125.92