Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03230 ATGGGAAATACAGAATCAATGTCTGAACCTCAACATGAATTTTACTATCAACACCCCCCTGCTAATTATGATGGCAGTTCAGTGAGTAATAGCTATCATCAACCTTCTTCTTATGCTGGAAGTTTGGATAATGATCAACCCTCTTCTTATACCGGAAGTTCAGGGAATACTAACCATCATCAACCGTCTTCATATGCTGCTGCTACGAGTTCGGCGAATACTTATGATCGTAGGAACAAGCAACCAACATATATAGCTGACAATTTCAGCTCATTGGAACAGGTTGTTTCTGCTCTGAGAGAAGCTGGTTTGGAATCGTCGAATTTAGTACTTGGTATTGATTTCACCAAAAGCAATGAGTGGACAGGTAAGTACGCGTTTCATCGGAAGAGTCTTCATCATATCGGAAGCAGTCCTAATCCGTATGAGCAAGCAATATCCATAATTGGGCGTACACTGTCTACTTTTGATGAAGATAATTTGATACCGTGTTTTGGGTTTGGTGATGCGTCTACACACGATAAGAATGTGTTTAGTTTCTTTCCGGGGAGTAGAGTCTGTCATGGTTTTGAGGAAGTGCTTGCACGCTATAGACAGATTGCTCCAGTCTTGAAATTGTCAGGGCCAACATCATTTGCCCCTGTAATAGATGCAGCAATTGACATTGTGGAAAGTAACAACGGTCAATATCATGTTCTTGTCATTATTGCTGATGGACAGGTTTCTAGAAATCCTGGTACACCGCATGGAAAGCTTAGTCCACAGGAACAAGCAACGATTAGTTCCATAATTGCTGCAAGTCATTATCCTCTCTCCATTATTTTGGTTGGAGTTGGAGATGGACCATGGGACGAGATGAAGCACTTTGATGATAACATTACTGGACGCTTATTTGACAACTTCCAGTTTGTAAACTTCACAAAGATCATGTCTGAGAACACAGAAGCATCCAAGAAGGAAACGGCATTTGCACTTGCTGCCCTTATGGAGATTCCATTTCAGTACCGGGCAGCTCAAAATATACAACTTTCCAACGAACCTGTTCGTCATCAACATAAAAGATCTCTCCCTCCACCAAAGGAAGTAATAGATCATGATAATACATTCATAGCAACTCCAGGCGTGACAAATTTCGATTTGGTTGTTCCAGAAACTCCAGCCAGTGCAGAACCAGTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGCGGTCATACTACTTGCAAGGAGTGTGGAGCGACATTATCTTTATGCCCTATGTGCAGGCAACAAATCACAACTCGCTTGAGATTATACACTTAA 1314 0.4186 MGNTESMSEPQHEFYYQHPPANYDGSSVSNSYHQPSSYAGSLDNDQPSSYTGSSGNTNHHQPSSYAAATSSANTYDRRNKQPTYIADNFSSLEQVVSALREAGLESSNLVLGIDFTKSNEWTGKYAFHRKSLHHIGSSPNPYEQAISIIGRTLSTFDEDNLIPCFGFGDASTHDKNVFSFFPGSRVCHGFEEVLARYRQIAPVLKLSGPTSFAPVIDAAIDIVESNNGQYHVLVIIADGQVSRNPGTPHGKLSPQEQATISSIIAASHYPLSIILVGVGDGPWDEMKHFDDNITGRLFDNFQFVNFTKIMSENTEASKKETAFALAALMEIPFQYRAAQNIQLSNEPVRHQHKRSLPPPKEVIDHDNTFIATPGVTNFDLVVPETPASAEPVCPICLTNPKDMAFGCGHTTCKECGATLSLCPMCRQQITTRLRLYT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03230 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 437 IPR013083 -
Vifa2g03230 437 ProSiteProfiles Zinc finger RING-type profile. 393 426 IPR001841 -
Vifa2g03230 437 MobiDBLite consensus disorder prediction 1 74 - -
Vifa2g03230 437 PANTHER COPINE FAMILY PROTEIN 1 53 413 - -
Vifa2g03230 437 SMART ring_2 393 425 IPR001841 -
Vifa2g03230 437 SMART VWA_4 106 309 IPR002035 -
Vifa2g03230 437 SUPERFAMILY RING/U-box 392 432 - -
Vifa2g03230 437 SUPERFAMILY vWA-like 107 290 IPR036465 -
Vifa2g03230 437 Pfam Copine 131 342 IPR010734 -
Vifa2g03230 437 Pfam Zinc finger, C3HC4 type (RING finger) 392 431 - -
Vifa2g03230 437 MobiDBLite consensus disorder prediction 22 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03230 Vifa-Chr2 926573129 926575693 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03230 K16280 - gmx:100776002 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03230 2 926573129 926575693 Vifa2g03230 2 926573129 926575693 ECH