LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03219	ATGGCTATAGGAAAATATTCTAGAGTTGATGGTAGAAGATCAACATCGGGTTACTGTTCAACGGTGACTATTGTTGTGCTTGTTGCTCTATGTTTGGTTGGGGTTTGGGTGATGACATCATCTTCTGTAGCTCCTGTGATGAATGGTGGAGATGGAGATGTGTCTCAGGAGAGTAAGAATGAGGTGAAAGAACAAAGTGATGTGAAGGAACCGGTGAGTGATACTGATAATAACAATGGTAGGCAGTTTGAAGATAATCCGGGTGATTTGCCTGAGGATGCGACCAAGGGGGACAGTAATGTTAACTCTGAAGAGAAGTCGGAGGAAAGTTCCACGGAGAAGTCTGCGGAAGCTACGAAGACAGATGATGAGGGGAAGAAAACAGAAGAGGAAGGTGCCAATACAGAGAATGTTGAACAAAACTCTGAAGCTACAGAAAGTAACAAGGATAGTGGAGAGTCCACTAAGGAATCTGATTCTGATGAGAGTGAAAAGAAAGATGAATCAGATGATAGCAACAAGTCAACAGATAATAATATAGAGGAGAAGGTGGAACGAAATGACAACAAAGAATCTGATGACAATTCTAGCGAGAAGAATACAGATGATAATGCAAAAGACCAAAGTTCAACTGAGGTGTACCCTTCAGGGGGTCAGTCTGAGCTTCTGAATGAAAATTCAACTCAAACTGGATCTTTTTCTACTCAGGCAGCAGAGTCAAAGAATGAAAAGGAGTCTCAGGAATCCTCCAAGACTGGGTACAATTGGAAAGTTTGTAATGTTACTGCTGGCCCCGACTTTATCCCATGTCTTGATAACTGGAAAGCGATTAGGAGTCTTCGGAGCACTAAACACTATGAACATCGTGAAAGACACTGTCCTGAAGAACCTCCCACCTGCCTTGTCTCTCTTCCTGAGGGATATAAGCGCTCTATTGAGTGGCCTAAAAGCAGAGATAAGATATGGTATTACAATGTTCCACACACTAAGCTTGCTGAAGTTAAGGGGCATCAAAATTGGGTGAAAGTCACAGGCGAGTACCTTACTTTCCCTGGTGGCGGAACCCAATTCAAGCACGGGGCACTTCATTACATTGACTTTATTCAAGAGACTCTATCTGACATTGCTTGGGGAAAACGCACACGTGTTATACTAGATGTTGGATGTGGTGTTGCCAGCTTTGGAGGCTTTCTCTTTGATAGAGATGTACTTGCAATGTCACTTGCACCAAAGGATGAACACGAAGCTCAGGTCCAGTTTGCTCTCGAGAGGGGAATTCCTGCTATATCTGCTGTAATGGGAACAAAGAGGCTTCCCTTCCCTGGGAGAGTATTTGATGCAGTCCATTGTGCACGGTGTAGAGTTCCATGGCACATAGAAGGTGGTAAACTTCTTTTGGAGCTGAACAGAGTATTGCGGCCTGGTGGTTATTTTATATGGTCTGCTACTCCTATTTATCAGAAGCTTCCTGAAGATGTTGAAATATGGAATGAAATGAAAGCACTAACAAAATCAATATGCTGGGAACTTGTGGCGATCGACAAGGACCAAGTTAATGGAGTTGGTGTAGCCATATACAAGAAGCCACTATCCAACGAGTGTTATGAGAAACGATTAAAGAATGAGCCTCCGCTGTGTCCAGCATCGGATGATCCCAATGCAGCATGGTATATTAAATTGCAAGCATGCATACACAAAGTGCCAGTTAGCTCAAGTGAACGTGGGTCACAATGGCCAGAAAAGTGGCCAGCCAGACTGACCAATGTACCATATTGGTTGTCAAGTTCCCAAGTTGGAGTTTATGGAAAGCCGGCACCCGAAGATTTTGCTGCTGATGATAAACACTGGACAAATGTAGTGTCCGAGTCTTATCTAAATGGGATGGGAATTCAGTGGTCAAATGTGCGTAATGTCATGGATATGAATTCTATCTATGGAGGATTTGCTGCAGCTTTGAAAGATTTGAAAATTTGGGTCATGAATGTAGTTTCAATAGAATCCGCAGATACCCTTCCCATTATTTATGAACGTGGTCTTTTTGGTATATATCATGATTGGTGCGAATCATTTAGTACCTATCCCAGATCGTACGATCTCCTTCATGCAGATCATCTGTTTTCGAAGGTTAAGAAAAGATGCTCTTTAGCTTCTCTATTAGCCGAGGTTGATCGGATTCTCAGGCCCGAAGGAAAGCTTATTGTCCGCGACACTGTTGAGATAATTAACGAGCTTGAGAGCATGGTAAGGTCCATGCAGTGGGAGGTTCGCATGACGTACTCCAAGGATAAGGAGGGTTTGTTATGTGTTCAGAAGTCCAAGTGGCGGCCTAAGGAGACAGAGACACTCCAGTATGCTATTGTTTAA	2364	0.4323	MAIGKYSRVDGRRSTSGYCSTVTIVVLVALCLVGVWVMTSSSVAPVMNGGDGDVSQESKNEVKEQSDVKEPVSDTDNNNGRQFEDNPGDLPEDATKGDSNVNSEEKSEESSTEKSAEATKTDDEGKKTEEEGANTENVEQNSEATESNKDSGESTKESDSDESEKKDESDDSNKSTDNNIEEKVERNDNKESDDNSSEKNTDDNAKDQSSTEVYPSGGQSELLNENSTQTGSFSTQAAESKNEKESQESSKTGYNWKVCNVTAGPDFIPCLDNWKAIRSLRSTKHYEHRERHCPEEPPTCLVSLPEGYKRSIEWPKSRDKIWYYNVPHTKLAEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETLSDIAWGKRTRVILDVGCGVASFGGFLFDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGRVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGYFIWSATPIYQKLPEDVEIWNEMKALTKSICWELVAIDKDQVNGVGVAIYKKPLSNECYEKRLKNEPPLCPASDDPNAAWYIKLQACIHKVPVSSSERGSQWPEKWPARLTNVPYWLSSSQVGVYGKPAPEDFAADDKHWTNVVSESYLNGMGIQWSNVRNVMDMNSIYGGFAAALKDLKIWVMNVVSIESADTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKVKKRCSLASLLAEVDRILRPEGKLIVRDTVEIINELESMVRSMQWEVRMTYSKDKEGLLCVQKSKWRPKETETLQYAIV	787

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g03219	787	PANTHER	SAM-DEPENDENT METHYLTRANSFERASE	22	775	IPR004159	GO:0008168
	Vifa2g03219	787	CDD	AdoMet_MTases	384	479	-	-
	Vifa2g03219	787	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	289	545	IPR029063	-
	Vifa2g03219	787	MobiDBLite	consensus disorder prediction	45	251	-	-
	Vifa2g03219	787	MobiDBLite	consensus disorder prediction	207	240	-	-
	Vifa2g03219	787	MobiDBLite	consensus disorder prediction	56	71	-	-
	Vifa2g03219	787	MobiDBLite	consensus disorder prediction	86	134	-	-
	Vifa2g03219	787	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	615	766	IPR029063	-
	Vifa2g03219	787	MobiDBLite	consensus disorder prediction	149	206	-	-
	Vifa2g03219	787	Pfam	Putative S-adenosyl-L-methionine-dependent methyltransferase	266	771	IPR004159	GO:0008168
	Vifa2g03219	787	Gene3D	Vaccinia Virus protein VP39	355	554	IPR029063	-
	Vifa2g03219	787	FunFam	probable methyltransferase PMT23	356	540	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03219	Vifa-Chr2	924209458	924214088	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03219	-		-	gmx:100777586	1249.19