Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03203 ATGATGAAGAAATCCACCACCATTCTCACCCACTTCAAATCTCGCATCACTCATCTTCTCGCCGATCGCCGGAAACCCAATCTCACCAACCTCCATCCACGTCGCTTTAACTCCACCACTGCCAATAACCCTTCCATTCACGACCAGGTTATAGATTTTCCTGGAGGAAATGTCAAGTTCATCCCTCACATGAGATTCTTATCTGAATCAACTGAAGACAGAATCCCTTGCTACCGTGTTCTTGATAACAATGGGGACCAAATTTCAGGGACTCAGTCTGTCCAGGTTAGTGAGGATGTTGCGGTTAAAATGTATAATGACATGGTTGCACTACAAACTATGGACACTATCTTCTATGAAGCGCAACGACAAGGAAGAATCTCATTTTATTTAACAACAATCGGGGAAGAGGCTATCAACATTGCATCTGCTGCAGCTCTTTCCATGGATGATGTTATTTTCCCTCAGTATAGGGAACAGGGAGTGTTGTTATGGCGTGGTTTCACTCTGCAAGAATTTGCAAATCAATGCTTTTCCAATAAATTTGATAATGGGAAAGGAAGGCAGATGCCGATTCATTATGGGTCTAACAAGCACAACTATGTGACTGTATCATCAACCATTGCTACGCAAATTCCCCATGCTGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGGATGCATGTGCTGTAACTTACTTTGGAGATGGCGGTTCAAGTGAGGGAGATTTCCATGCCGGATTAAATTTTGCAGCGGTAATGGAGGCCCCGGTCATTTTTATATGCCGGAATAATGGATGGGCTATCAGTACTCCTACATCAGATCAGTTTCGAAGTGATGGTATTGTTGTAAAAGGACAAGCTTATGGAGTTCGTAGTATTCGTGTAGATGGGAATGATGCTCTGGCCATTTACAGTGCTGTTCAAGCTGCTCGTCAAATGGCAGTTAGCGAAAAGAGACCAATTTTAATAGAAGCTCTTACCTATAGAGCAGGACACCACTCCACATCAGATGACTCTACCAAGTATCGTCCGGTCAAAGAGATTGATTGGTGGAGATCAACGCGTGATCCTGTGGCAAGATTTAGAAAGTGGATAGAAAGGAATGGCTGGTGGAATGACATTGCTGAGTCTGAGCTTCGAAACAGTTTGAGACAGCAGCTTCTACAGACGATTCATGTTGCTGAGAGTGTAGAAAAACCTCCCCTTGCAGACTTGTTTAACGATGTTTACGATGTTCCTCCATCCAATCTCTGCCAACAGGAGAAATGGCTGAAGGGGACTGTAAAAAAACATCCAAATGAGTATCCAACAAATATTCCCATGTAG 1332 0.4324 MMKKSTTILTHFKSRITHLLADRRKPNLTNLHPRRFNSTTANNPSIHDQVIDFPGGNVKFIPHMRFLSESTEDRIPCYRVLDNNGDQISGTQSVQVSEDVAVKMYNDMVALQTMDTIFYEAQRQGRISFYLTTIGEEAINIASAAALSMDDVIFPQYREQGVLLWRGFTLQEFANQCFSNKFDNGKGRQMPIHYGSNKHNYVTVSSTIATQIPHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAVSEKRPILIEALTYRAGHHSTSDDSTKYRPVKEIDWWRSTRDPVARFRKWIERNGWWNDIAESELRNSLRQQLLQTIHVAESVEKPPLADLFNDVYDVPPSNLCQQEKWLKGTVKKHPNEYPTNIPM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03203 443 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 43 441 - -
Vifa2g03203 443 CDD TPP_E1_PDC_ADC_BCADC 104 402 - -
Vifa2g03203 443 Gene3D - 45 441 - -
Vifa2g03203 443 Pfam Dehydrogenase E1 component 108 402 IPR001017 GO:0016624
Vifa2g03203 443 FunFam 2-oxoisovalerate dehydrogenase subunit alpha 46 442 - -
Vifa2g03203 443 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 75 439 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03203 Vifa-Chr2 920046855 920049010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03203 29 281 Acyl Lipid Metabolism Gene Families AT5G09300 75.099 6.62e-141 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03203 K00166 - gmx:100779198 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03203 2 920046855 920049010 Vifa2g03203 2 920046855 920049010 ECH