Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03201 ATGGATTCGAGTACAACCCATGAATTCGATTATTTGTTCAAATTATTAATGATTGGGGACTCCGGAGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCTCTGATTCTTTCGAAGATCTTTCTCCTACAATTGGGGTTGATTTTAAGGTCAAATATGTTACTATTGATGATAAAAAGTTGAAGCTTGCTATCTGGGATACCGCTGGTCAAGAGAGATTCAGAACATTAACGAGTTCTTATTATCGAGGCGCACAAGGGATCATTATGGCTTACGATGTTACTCGACGAGATACATTTACAAACCTCTCTGAAGTCTGGGCTAAGGAAATAGACCTTTATTCAACAAATCAGGACTGCATCAAGATGCTTGTTGGAAACAAAGTGGATAAGGAGAGTGATAGAGTTGTGACAAAGAAAGAAGGAGTAGACTTTGCAAGAGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTACAACAGTGCTTTGAAGAGCTTGTTTTGAAGATTTTAGACACACCTAGCCTCATAGCCGAGGGTTCCAAAGGGGTCAAAAAGAACATTTTTAAGGACAAGGAACTCCAGTCTAATGGAGCCACAAGTGGTTGTTGCTGA 627 0.3987 MDSSTTHEFDYLFKLLMIGDSGVGKSSLLLCFTSDSFEDLSPTIGVDFKVKYVTIDDKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMAYDVTRRDTFTNLSEVWAKEIDLYSTNQDCIKMLVGNKVDKESDRVVTKKEGVDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLIAEGSKGVKKNIFKDKELQSNGATSGCC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03201 208 ProSiteProfiles small GTPase Rab1 family profile. 8 208 - -
Vifa2g03201 208 SMART rab_sub_5 13 177 - -
Vifa2g03201 208 CDD Rab18 13 174 - -
Vifa2g03201 208 SMART arf_sub_2 1 178 - -
Vifa2g03201 208 SMART ras_sub_4 10 177 - -
Vifa2g03201 208 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Vifa2g03201 208 SMART ran_sub_2 18 208 - -
Vifa2g03201 208 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
Vifa2g03201 208 PANTHER RAS-RELATED PROTEIN RAB 12 189 - -
Vifa2g03201 208 NCBIfam small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Vifa2g03201 208 Gene3D - 5 208 IPR027417 -
Vifa2g03201 208 FunFam Ras-related protein RABC1 6 208 - -
Vifa2g03201 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Vifa2g03201 208 PRINTS Transforming protein P21 ras signature 13 34 - -
Vifa2g03201 208 PRINTS Transforming protein P21 ras signature 53 75 - -
Vifa2g03201 208 PRINTS Transforming protein P21 ras signature 35 51 - -
Vifa2g03201 208 PRINTS Transforming protein P21 ras signature 152 174 - -
Vifa2g03201 208 PRINTS Transforming protein P21 ras signature 117 130 - -
Vifa2g03201 208 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Vifa2g03201 208 ProSiteProfiles small GTPase Ras family profile. 2 208 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03201 Vifa-Chr2 919063783 919068981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03201 14 167 EF-hand Containing Proteins AT5G27540 27.500 7.29e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03201 K07910 - gmx:100779729 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03201 2 919063783 919068981 Vifa2g03201 2 919063783 919068981 PCT