Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03200 ATGGAATCGGACAAAACAAGCACTCTCAATCTCATCTTCGGACCCTACACCAGACCTTCATACCCAATCCTCCTTCTCATCTTCACCCTCCTCGCCATCCTCTCTCTCCAATTCTCCACCCGCTCTCTCTTCCCCCTCTCCATCCTCCTCTCCCAACCACCACAGCCTACCACCTGCTCCGCTTTCTTCCACGATGTCCCTCCCAGAAAAATTATCAAATCGATCGTCGATTTCGGCGGCGTCGGCGATGGCAAAACCTCCAACACCCAATCCTTTCAAAACGCGATTCGCTACATGCAGCGTTTTCAAGGTAAAGGTGGGTCCCAGCTTAATATCCCCGCTGGAACGTGGCTTACTGGTAGTTTTAATCTCACCAGTGATTTCACGCTTTTTCTTCATCACGGTGCGCTTATTTTAGGTTCTCAGGATCCAAAAGAATGGCCTATTATTGAACCTTTGCCATCTTATGGAAGGGGAAGAGAGAGGTTAGGAGGAAGACACATTAGTCTTATACATGCAAATGGAGTCCGTAATGTTGTAATCACAGGAGAAAATGGAACAGTTGATGGTCAAGGGAAAATGTGGTGGGAGCTTTGGTGGAACAGAACATTGGAGCACACAAGAGGCCACCTCCTTGAACTCATGAACTCAGAAAATGTTTTAGTTTCAAACCTCACCTTTAGAAATTCTCCTTTCTGGACCATCCATCCTGTTTACTGCAGCAATGTTGTGATCAAAGGGATGACAATCTTGGCCCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCGAGTACCAAAGTGTGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACCATGGCTAAGCCTAGCACAAACATCATAGTGAGAAGAGTTTCAGGCACTACCCCAACTTGCTCAGGAGTAGGAATAGGCAGTGAGATGTCAGGTGGAGTTTCAAATATTATAATCGAGGATTTGCACGTGTGGAACTCTGCAGCAGGTGTTCGTTTAAAATCTGATAATGGCAGAGGGGGGTATGTAACTAATGTGAGTATAAGCAATATAAGAATGGAGAGGGTGAAGATACCAATTAGATTCAGTAGAGGTTCGAATGATCATCCTGATGATGGGTGGGATTCAAAAGCTGTTCCTAGATTTAAAAATATTTTAATCAGCAACGTGGTCAGTGTAAATTCAACGAAAGCTCCGGTTCTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTGTGCTTCAAGAATATTACTCTTCTTGGTGTAGCATTATCTGCAACATGGCGTTGTGAATATGTTGCTGGTTTCGCAAATGGGGTGTTCCCTGTCCCGTGTCCTGAGTTGCAGAACAATGGCACTTCATCGTGGTGTTGA 1419 0.4496 MESDKTSTLNLIFGPYTRPSYPILLLIFTLLAILSLQFSTRSLFPLSILLSQPPQPTTCSAFFHDVPPRKIIKSIVDFGGVGDGKTSNTQSFQNAIRYMQRFQGKGGSQLNIPAGTWLTGSFNLTSDFTLFLHHGALILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGKMWWELWWNRTLEHTRGHLLELMNSENVLVSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTKVCIEDNYIESGDDLVAIKSGWDQYGITMAKPSTNIIVRRVSGTTPTCSGVGIGSEMSGGVSNIIIEDLHVWNSAAGVRLKSDNGRGGYVTNVSISNIRMERVKIPIRFSRGSNDHPDDGWDSKAVPRFKNILISNVVSVNSTKAPVLEGVEGSSFEGLCFKNITLLGVALSATWRCEYVAGFANGVFPVPCPELQNNGTSSWC 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03200 472 PANTHER PECTIN LYASE-RELATED 26 469 - -
Vifa2g03200 472 Gene3D - 62 450 IPR012334 -
Vifa2g03200 472 Pfam Glycosyl hydrolases family 28 169 449 IPR000743 GO:0004650|GO:0005975
Vifa2g03200 472 SUPERFAMILY Pectin lyase-like 66 463 IPR011050 -
Vifa2g03200 472 SMART pbh1 301 323 IPR006626 -
Vifa2g03200 472 SMART pbh1 267 299 IPR006626 -
Vifa2g03200 472 SMART pbh1 358 379 IPR006626 -
Vifa2g03200 472 SMART pbh1 240 266 IPR006626 -
Vifa2g03200 472 SMART pbh1 329 350 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03200 Vifa-Chr2 918425119 918427941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03200 1 472 Glycoside Hydrolase AT4G33440 67.722 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03200 - - gmx:100814190 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03200 2 918425119 918427941 Vifa2g03200 2 918425119 918427941 ECH