Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03199 ATGAAGATGAAATCCTATTCTTCATTCTTCTTCATGTTCCTCGTTCTAGCCTTTAGCAGCATACAAGTAAGCTTAGCAGACTGTGATAATCTACAGGACACATGCCCCACATCTCCGCCAGAAAAAAAGACAACATTCATCAATGCCCTCTCCTGCAATAACCCGGCTAACAAATCTGCTCATGATTTCAAGACCATGGAATTAAGCAAAGCTGGTTCAAGAGATCAGTTTGGTTCATCAGTCAACATTGTCACCGCTTCAAAGTTCCCTGGTCTCAACACTCTTGGGATCTCAATTGGTAGGACGGACATTGAAGCGGATGGAATTGTGAACCTCCATAATCATCCAAGAGCTAGCGAGATGATCTTTGTTAAGGAAGGTGTATTGGAAGTTGGGTTTCTCGATACACAAAATAAGCTTTTTCAGAAGGCTTTGAAGGAATGTGATGTGTTTGTGCTACCTAAGGGCTTGTTCCATTACTTTTTAAATCGCGGTATAGAAGTCGCAACTGTGTTTTCTGTGTTTAATAGCCAAAATCCAGGGTTCCAATCTCTTACACCCAAACGTTCTACTTCTGAATCAGTTGAGAAGATAAAGAGGAAGCTTATATCACTTTCTGAATTAGAGCTTGATAGTGTAAATGATTTGAGTTTGGCTGTGTCGGAGATTATTTACAGTTAA 681 0.4023 MKMKSYSSFFFMFLVLAFSSIQVSLADCDNLQDTCPTSPPEKKTTFINALSCNNPANKSAHDFKTMELSKAGSRDQFGSSVNIVTASKFPGLNTLGISIGRTDIEADGIVNLHNHPRASEMIFVKEGVLEVGFLDTQNKLFQKALKECDVFVLPKGLFHYFLNRGIEVATVFSVFNSQNPGFQSLTPKRSTSESVEKIKRKLISLSELELDSVNDLSLAVSEIIYS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03199 226 CDD cupin_OxOx 27 185 IPR001929 GO:0030145
Vifa2g03199 226 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Vifa2g03199 226 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Vifa2g03199 226 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Vifa2g03199 226 Gene3D Jelly Rolls 26 214 IPR014710 -
Vifa2g03199 226 SUPERFAMILY RmlC-like cupins 59 186 IPR011051 -
Vifa2g03199 226 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 20 190 - -
Vifa2g03199 226 FunFam germin-like protein subfamily 2 member 1 26 217 - -
Vifa2g03199 226 Pfam Cupin 77 195 IPR006045 -
Vifa2g03199 226 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Vifa2g03199 226 SMART Cupin_1_3 69 199 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03199 Vifa-Chr2 918423739 918424419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03199 7 187 Miscellaneous Gene Families AT3G05930 39.344 2.67e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03199 - - mtr:112420373 353.984