Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03138 ATGGCATTTGGTTCTCCCACCGTATCACATGGAGTATCATGCAAGTCACCAAATGAATGGATTGATAGCACAAAGAAAGAATGGGAATTTAGCACCGGTGAAGGGCCTAGAGACACTTTCCATGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCCAACGGCCCCGGAGATCCGTGTGCTGTTCCTTATGCCGTTGAGACCGTAAAGAATATTATTGGAAAGGTTCCGGTTTTTGGAATTTGCATGGGACATCAATTGCTAGGCCAGGCTTTAGAAGGTACAACCTACAAGATGAAATTCGGCCATCATGGAGGAAATCATCATGTTCACAACCTTCGAACTGGCCGCGTTGAAATTAGTTCTCAGAATCACAACTATGCGGCCGATCCTGCGACACTTCCTGAAGGAGTAGAGGTTACTCATATCAATCTTAACGATAATAGTTGTACTGGTCTTGCATTCCCTGCTAAAAAGCTCGTGTCTCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCCGACAACGCTTTTGGCGAGTTCATAGAGCTAATAAAGCACGGAAAAAACAAAATGCCAAACAAAAACATACACGAACTACAATCGGGCAAGGTCGCGAGGATCCTTTGCTCAAATGATACAAGGATATTCCAACCAAGGATCAAGGCAATTGAAAACAGGTTAAGGCCTCCCTCTGCAGTGTTCTTTGATGACGAGGAATCAGCGCAGTGGTTTCTTTCTGGTCTAGTAATTAGAAGTTTGAGTATCAGTACCTTGAACTGGAGATGCGTGAAAGATCTGGGGGATTACTTGACAGAAAGGAATGTCATGGGAATTTATGATGTTGATACACGGGAAATCACCCGCAGATTAAGGGAAGATGGAAGTCTTATTGGTGTTTTGAGCACTGACAATTCCAAAACAAATGACAAATTACTTCACATGTCCAAATCATGGAACATTGTTGGTGTTAATCTAATAAGCGGAGTATCATGCAAGTCTCCATATGAATGGATTGATAGCACAAAGAAAGAATGGGAATTTAGCGCCGGTGAAGGGCCTAGAGACACTTTCCATGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCGTATGGCTGTAAAATCACTGTTGTGCCATCTACATGGCCAGCATCCGAAACTTTGAAGTTAAATCCAGATGGCGTGCTTTTCAGCAACGGCCCCAGAGATCCGTCTGCTGTTCCTTATGCCGTTGAGACCGTAAAGAATATTATTGGAAAGGTGCCTGTTTTCGGAATTTGCATGGGACATCAATTGCTAGGCCAGGCTTTAGGAGGTACAACCTACAAGATGAAATTCGATCATCATGGAGGAAATCATCCTGTTCGCAACCTTCGAACTGGCCGCGTTGAAATTAGTTCTCAGAATCACAACTATGCGGTCGATCCTGCGACACTTCCTGAAGGAGTAGAGGTTACTCATATCAATCTTAACGACAATAGTTGTGCTGGTCTTGCATTCCCTGCTCAAAAGCCTGTGTCTCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCCGACAACGCTTTCGGTGAGTTCATAGAGCTAATAAAGCACGGAAAAAACAAAATGCCAAACAAAAACATACACGAACTACAATCGGTGTAA 1698 0.4329 MAFGSPTVSHGVSCKSPNEWIDSTKKEWEFSTGEGPRDTFHVVAYDFGIKHNILRRLASNGPGDPCAVPYAVETVKNIIGKVPVFGICMGHQLLGQALEGTTYKMKFGHHGGNHHVHNLRTGRVEISSQNHNYAADPATLPEGVEVTHINLNDNSCTGLAFPAKKLVSLQYHPEASPGPHDSDNAFGEFIELIKHGKNKMPNKNIHELQSGKVARILCSNDTRIFQPRIKAIENRLRPPSAVFFDDEESAQWFLSGLVIRSLSISTLNWRCVKDLGDYLTERNVMGIYDVDTREITRRLREDGSLIGVLSTDNSKTNDKLLHMSKSWNIVGVNLISGVSCKSPYEWIDSTKKEWEFSAGEGPRDTFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLNPDGVLFSNGPRDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMKFDHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPEGVEVTHINLNDNSCAGLAFPAQKPVSLQYHPEASPGPHDSDNAFGEFIELIKHGKNKMPNKNIHELQSV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03138 565 Gene3D - 7 197 IPR029062 -
Vifa2g03138 565 Gene3D - 329 551 IPR029062 -
Vifa2g03138 565 CDD GATase1_CPSase 368 544 IPR035686 -
Vifa2g03138 565 Gene3D - 237 328 IPR036480 -
Vifa2g03138 565 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 41 199 - -
Vifa2g03138 565 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 437 453 - -
Vifa2g03138 565 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 368 382 - -
Vifa2g03138 565 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 479 490 - -
Vifa2g03138 565 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 407 421 - -
Vifa2g03138 565 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 454 471 - -
Vifa2g03138 565 SMART CPSase_sm_chain_2 226 310 IPR002474 -
Vifa2g03138 565 PRINTS Anthranilate synthase component II signature 410 419 - -
Vifa2g03138 565 PRINTS Anthranilate synthase component II signature 522 535 - -
Vifa2g03138 565 PRINTS Anthranilate synthase component II signature 437 448 - -
Vifa2g03138 565 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 367 553 - -
Vifa2g03138 565 Pfam Glutamine amidotransferase class-I 50 191 IPR017926 -
Vifa2g03138 565 Pfam Glutamine amidotransferase class-I 371 545 IPR017926 -
Vifa2g03138 565 NCBIfam glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 245 548 IPR006274 GO:0004088|GO:0006207|GO:0006541
Vifa2g03138 565 SUPERFAMILY Class I glutamine amidotransferase-like 36 195 IPR029062 -
Vifa2g03138 565 PRINTS Glutamine amidotransferase superfamily signature 437 448 - -
Vifa2g03138 565 PRINTS Glutamine amidotransferase superfamily signature 410 419 - -
Vifa2g03138 565 PRINTS Glutamine amidotransferase superfamily signature 522 535 - -
Vifa2g03138 565 CDD GATase1_CPSase 42 190 IPR035686 -
Vifa2g03138 565 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 246 536 - -
Vifa2g03138 565 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 245 308 IPR002474 -
Vifa2g03138 565 FunFam carbamoyl-phosphate synthase small chain, chloroplastic 329 551 - -
Vifa2g03138 565 SUPERFAMILY Class I glutamine amidotransferase-like 360 549 IPR029062 -
Vifa2g03138 565 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 244 326 IPR036480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03138 Vifa-Chr2 901514289 901531506 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03138 K01956 - gmx:100806168 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03138 2 901514289 901531506 Vifa2g03138 2 901514289 901531506 ECH