Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03108 ATGGCTAGAGCTGAATTCCCCATAAAAGCACTTTTTTTAATACTTTTTCTAGCTTATGACACCCTAAAATGTGTCCATGGGGCTGAGTCCATCCAAGGTCTAGGTATCAATTGGGGTGCTCTTGCATCACATCCTATGGATCCTCGCATTGTTGCAAATATGTTGAAGGATAACGGAATCTATAAGGTTAAACTTTTTGATGCAGATTCTTGGGTTGTTAGTGCTTTTTCGGATACAGGAATTGAAGTTATGGTTGGAATTCCGAATGATCAATTGAGTAAATTTGCGAGAAGTAGTTGGGATGCAGAAGATTGGGTCAAACAAAACATCACCAAACATCTTTATAATGGAGGCGTAAATATCAGATACATATCGGTTGGAAATGAACCGTTTTTGAAAAGTTATAATGGTTCATATATTAGGACAACGTTTCCGGCTATGCAAAATATTCAAAAGGCAATTGATAAAGCTGGAATCCGAGACAAAGTTAAGGTGACAACAGCTTTAAATGCAGATGTTTACGAGTCTAGTTCAAACAAACCATCTGATGGAGATTTTCGAGACGACATTCGCGACGTTATGAAAGAAATAATTCAATTTCTTCACGAAATAAATTCTCTGTTTCTTGTTAACATATACCCTTTCCTTAGTCTATATCAAAGCGAAAGTTTTCCAAAAGATTTCGCATTTTTTGATAGTCAAAGTCAAGCAATTAGTGACAATAGTGCACAATACAACAATGTGTTTGATGCAAATTTTGACACACTTGTTTGGGCATTAAAAAAAGCCGGTTACAACGACATGAGAATTGTCGTTGGTGAAATCGGTTGGCCAACGGACGGTAACCAAAATGCTAATCCTAATTATGCAAAAAGATTTTATCAAGGGTTTCTTAAAAAATTGGCAAGCAAACAAGGTACTCCAATTCGCCCCGGGGCTATGGAAGTGTATCTATTTTCTCTTTTCGACGAGAATTTAAAGAGTATTGAACCTGGTAATTTCGAGCGTCACTGGGGAATTTTTCGCTATGATGGAAAGGCAAAATTTCCTATAGACTTTTCGGGCAACGGAGAAGAGAAATGGCCACAAGAAGCAAAAGGCGTTAGATACCAAGAACATAAATGGTGTGTCCTAAGCGCAGAAGTAAAGAATTTGAGTTTAGTCCCAGGGACATTAGACTATGCTTGTGCCAATGCTGATTGTACAAGTTTAGGATATGGTTGTTCTTGTGACAACTTAAACCTAGCTGGGAATGCATCTTTTGCTTTTAATCAATATTTTCAAACAAGAGACCAAAGTGTTGAGGCATGTAATTTCAATGGAATGGGCAGTATTGTAACAGAGGATCCATCAAAGGGAACTTGTTTGTTTCCTATAGAAATTGAGAGCAGTGGATACATGGTGACAACTATAAGTATTGTGACAAATTTTTTGATTGGGCTGTCCATGTTTTTTATAACATCATGA 1467 0.3715 MARAEFPIKALFLILFLAYDTLKCVHGAESIQGLGINWGALASHPMDPRIVANMLKDNGIYKVKLFDADSWVVSAFSDTGIEVMVGIPNDQLSKFARSSWDAEDWVKQNITKHLYNGGVNIRYISVGNEPFLKSYNGSYIRTTFPAMQNIQKAIDKAGIRDKVKVTTALNADVYESSSNKPSDGDFRDDIRDVMKEIIQFLHEINSLFLVNIYPFLSLYQSESFPKDFAFFDSQSQAISDNSAQYNNVFDANFDTLVWALKKAGYNDMRIVVGEIGWPTDGNQNANPNYAKRFYQGFLKKLASKQGTPIRPGAMEVYLFSLFDENLKSIEPGNFERHWGIFRYDGKAKFPIDFSGNGEEKWPQEAKGVRYQEHKWCVLSAEVKNLSLVPGTLDYACANADCTSLGYGCSCDNLNLAGNASFAFNQYFQTRDQSVEACNFNGMGSIVTEDPSKGTCLFPIEIESSGYMVTTISIVTNFLIGLSMFFITS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03108 488 Pfam Glycosyl hydrolases family 17 34 353 IPR000490 GO:0004553|GO:0005975
Vifa2g03108 488 FunFam Glucan endo-1,3-beta-glucosidase 8 370 466 - -
Vifa2g03108 488 SMART X8_cls 374 457 IPR012946 -
Vifa2g03108 488 Gene3D - 370 463 - -
Vifa2g03108 488 Pfam X8 domain 374 443 IPR012946 -
Vifa2g03108 488 Gene3D Glycosidases 32 360 - -
Vifa2g03108 488 ProSitePatterns Glycosyl hydrolases family 17 signature. 268 281 IPR000490 GO:0004553|GO:0005975
Vifa2g03108 488 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 445 IPR044965 GO:0004553|GO:0005975
Vifa2g03108 488 FunFam Glucan endo-1,3-beta-glucosidase 5 33 359 - -
Vifa2g03108 488 SUPERFAMILY (Trans)glycosidases 34 353 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03108 Vifa-Chr2 889212725 889214295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03108 28 463 Miscellaneous Gene Families AT5G64790 54.358 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03108 - - gmx:100794658 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03108 2 889212725 889214295 Vifa2g03108 2 889212725 889214295 ECH