Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03102 ATGGCGACGGTAATGCAGAAAATCAAAGATATCGAAGATGAGATGGCAAAGACTCAAAAGAACAAGGCTACTGCTCATCATTTAGGGTTACTGAAGGCTAAACTTGCAAAGCTGCGGAGGGAGCTCCTTACCCCTACAACTAAAGGAGGTGGAGGTGCTGGCGAAGGTTTTGATGTTACTAAAAGTGGAGATGCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAGTCTACTCTGCTGAATAAATTGACTGGGACATTTTCAGAGGTTGCTTCCTATGAGTTTACTACCTTGACATGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATTCAGTTGCTGGATCTCCCTGGAATTATTGAAGGTGCCAAGGATGGAAAGGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGGACATGTAATTGCATTTTAATTGTTCTGGATGCAATAAAACCAATAACTCATAAGCGTCTTATTGAGAAAGAGCTAGAAGGATTTGGTATAAGGTTAAACAAAGAACCCCCAAACCTGACTTTTAGGAGGAAAGAGAAGGGTGGGATTAATTTCACCTCAACTGCTGCAAACACTCATCTGGATCTTGATACTGTGAAGGCTATATGTAGCGAGTACCGAATTCATAATGCAGATATTACTCTAAGGTATGATGCCACTGCTGATGACCTTATAGATGTCATTGAGGGCAGTAGAATATATACACCCTGCATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTTCCTCATTACTGCCCTGTCAGTGCGCATCTGGAGTGGAATCTTGATGGGCTTCTGGATAAAGTTTGGGAATATCTCTGTTTAACTCGTATTTATACTAAACCAAAAGGTATGAATCCTGATTATGAAGACCCTGTAATATTGTCGTCTAAGAAGAAGACAGTTGAAGACTTCTGCGACCGCATTCACAAGGACATGCTTAAACAGTTTAAGTATGCTCTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGGAACATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA 1107 0.4155 MATVMQKIKDIEDEMAKTQKNKATAHHLGLLKAKLAKLRRELLTPTTKGGGGAGEGFDVTKSGDARVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRRKEKGGINFTSTAANTHLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYTPCIYVVNKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLDKVWEYLCLTRIYTKPKGMNPDYEDPVILSSKKKTVEDFCDRIHKDMLKQFKYALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03102 368 CDD TGS_DRG1 288 367 - -
Vifa2g03102 368 CDD DRG 65 297 IPR045001 GO:0003924|GO:0005525
Vifa2g03102 368 FunFam Putative GTP-binding protein 1 53 191 - -
Vifa2g03102 368 Coils Coil 1 21 - -
Vifa2g03102 368 FunFam Developmentally-regulated GTP-binding protein 1 283 367 - -
Vifa2g03102 368 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 65 290 IPR031167 GO:0005525
Vifa2g03102 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 304 IPR027417 -
Vifa2g03102 368 Pfam 50S ribosome-binding GTPase 66 158 IPR006073 GO:0005525
Vifa2g03102 368 SUPERFAMILY TGS-like 286 366 IPR012676 -
Vifa2g03102 368 Gene3D - 1 85 - -
Vifa2g03102 368 Gene3D - 128 238 - -
Vifa2g03102 368 Pfam C-terminal region of MMR_HSR1 domain 186 290 IPR031662 -
Vifa2g03102 368 Gene3D - 283 368 IPR012675 -
Vifa2g03102 368 NCBIfam small GTP-binding protein domain 64 216 IPR005225 GO:0005525
Vifa2g03102 368 Pfam TGS domain 293 366 IPR004095 -
Vifa2g03102 368 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 4 367 IPR045001 GO:0003924|GO:0005525
Vifa2g03102 368 ProSiteProfiles TGS domain profile. 290 366 IPR004095 -
Vifa2g03102 368 ProSitePatterns GTP1/OBG family signature. 117 130 IPR006074 GO:0005525
Vifa2g03102 368 PRINTS GTP1/OBG GTP-binding protein family signature 67 87 IPR006073 GO:0005525
Vifa2g03102 368 PRINTS GTP1/OBG GTP-binding protein family signature 132 150 IPR006073 GO:0005525
Vifa2g03102 368 PRINTS GTP1/OBG GTP-binding protein family signature 88 106 IPR006073 GO:0005525
Vifa2g03102 368 PRINTS GTP1/OBG GTP-binding protein family signature 115 130 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03102 Vifa-Chr2 887275546 887282710 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03102 K06944 - han:110903690 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03102 2 887275546 887282710 Vifa2g03102 2 887275546 887282710 ECH