Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03090 ATGGCTGAAGATAGCTTACGCCTTGGTGGGTTTTCAGCTGGTCTTGCTGTCATATTGAACGGGGAGGATACTAAAAAAAAGTTGCTGAAAACTCGGTTTCTTTCCTGCTCTGATGATTTTGGTGAACAGTCTGTGGAGAGAACGCTGGAATACGTGTTTGGTCTTCCCAACAGATCTTTGAATTCATTGGATGGTCCAGTTGACAGTAGTTTTATTCATTCGGTTATTAGGAATGTTTTTTTGAGGTGTAATGCAGATATTGATGATTCTTCTAGTGAAAGAGATATGATATGTAGACCAGATGTTGTGGGTTTAGAAGAATCCAGCATATGCGGTGATATTAAAATCATTAAAACGCCTTTTCTTATAGAGAGCTTGGAATTGTTCAGTAGTGCAAGGGTTAATACTTGTGTTTGGAAAGGGAAATGGATGTATGAAGTTTTGTTGGAAACATCTGGCATACAGCAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGTGATGCCGATGATTCATATGCCTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGGTGCTGAGACATATGGTCAGTCATGGGTTGTTGGTGATGTCATCGGATGTTGCATAGATTTGGAACAAGGTGAAATAATTTTCTACAGGAATGGAAGTTCACTTGGGACAGCATTCAGAGGAATTCAAAAAATGGGTCCTGGTTTTGGTTATCACCCAGCAATCTCTCTCTCCGAGGGTGAAAGATGTGAGTTGAACTTTGGAGCTCGGCCCTTCAAGTACCCAATTGAAGGTTACCGTCCTCTTCAGGCTCCTCCCTCTAAGTGCTACTTCGTCACACGATTGCTTCAGTGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGGGCTGAGCATTCATTAGCTCAGAAATTGAGAAGAGCAAAGAGGTTTGTTTCATTGGAAGTAATTTTCCGTCCTGTCTCCTATGCTATATGTGAGGAATTATTCTGTATACTTGAAGAAAATGTTGGACACACAGAGTATATGGTTTGGGGTCCATTGCTGTCCTTCATATTTGAAGTTTTTAAGTTGCATGCACCCCATGATTATTCAAGTTTGGATAAAGTTGTTGACGTACTGCTACAATTTCAAGGATCACATGTGCTGTTTGAAACCATCATAAACGCGCTTTCACGTGCTTGTAAAATGGCACAATTTGTTCTAACTGAATGTCCTTACTCTGGATCATATCCTTACCTTGCACTGGTATGCCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAATCACCAGATTTTGAATTTTTGTTTGAAGGTTTAATGTCGCGAAAAACTCCAAACAAGCAGGATCTTGACTCCTTGATACCCACTGTTTGGTGGCCCGGTTCATGTGAAGACGCTTGTTGCGAAGGTAACATGATGTTGGCAACCACAGCTTTGTCTGAATCAATCAGCAAGATTGAGGAGAAGCATCGGGACCTTTGTCGCTTAGTTATACAATTTATACCTCCCATGGCACCTCCCCAATTACCTGGAGCAGTATTTAGGACATTTTTACAAAACCTTCTACTGAAGAACAGAGGGGCAGAAAGAAATGTCCCACCACCCGGAGTTTCTAGCAATTCAGTTCTTATTTCAATTTATACAGTCTTGCTCCATTTTTTATCAGAAGGATTTGCATTGGGTGATATCTGCGGCTGGTTAAAGAGCTACAAATCAGATGTTGGTTTCCTTCACAGAGGTGGTCAACGAAGTTTTCCCATACACTTGTTTCTAAGAAATGACCCTCATAGAACTGATATTTCCAGGCTTGGGGGATCCTATACCCATTTATCAAAGCTACACTCTGTAATTGATCGTGAAAGGGAAGTAGTTCAATGGGATGAAGGTTGCATGGATAATGAACAAATCAGAGTGACTCATTCAACCAAACAGAAGCCGTGCTGTTGTTCAAGTTATGATTCTGAATTTGCAAGGAATTCAAAGGTTCCAGCTAAATACCTGGCCAAAGGGTCTCGAGGCCATTGTAGCTCTATTCCCGAAAGACCTGCTCATGTTGCTGCTGAATGCAGTGATGGGAGTTTGAATGATGAGATAGCAGATAAACCCAGTTCCAGTGATCAATCTGAACCCGAGTATGGTTACCGCCAAGTGCACCATCTGAAGTCTGTACCAAAGGATATTGATATGTGTATAGATATGCTACAAGAAGAAGAGCTGCTTGATGCTTTGTTATGTTTGTATCAATTTGGTCTTGCTCCAAATTTTAAGCAGGCATCGTATTACATGACTCATCAGGCACAATCAATTTCCCTTTTGGAGGAAACTGATAAGCAAATAAGAGACCGGGCTTGTGGTGAAAAATTGAAGCATTTGAAAGAAGCTCGTAACGAGTATAGAGAGGAGGTCATTGACTGTGTTAGACATTGTGCCTGGTATCGTATCTCTTTGTTATCTCGATGGAAGCAACGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCCGTGTTTATCTACACCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCATTTGTTCCATCCACAATTTTGATCAAGCATGGACTTGTTTCATTTGTCACTTTTGTAGTTACTCATTTCAATGATCCAAGGATATCAAGTGCGGATCTTAGGGATCTTCTTCTCCAGTCTATATCCGCCCTGGTGCAGTACAGAGAGTATTTTGCAGTTTTTGAGAGCAACGAGGCAGCCAACCAAAGGCTGCCAAAAGCTCTGTTATCAGCATTTGATAACAGATCTTGGATCCCGGTGACGAACATACTTCTGCGGTTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCATCATCAATTCTTTTCCAAAGGTTGCTGAAAGAAGCTTGCATAAATGATGAAGGATTGTTTTCATCTTTCCTAAACCGTCTATTTAATATACTTAGCTGGAGTATGACTGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATGGAGTTTCAGCAAAAGAAATGTGGTGTCATATTTGATCTCTCATGTAATCTTGCAAGAATTTTGGAGTTCTGTACTCATGAGATTCCTCAAGCATTCCTGTCTGGACCAGAAACAAACCTAAGGAGGTTAACTGAGTTGGTTGTATTTATCTTGAATAACATTACTTCTTCAGCTGATGCTGAATTCTTTGACTTGTCCCTTAGACGGCATAACCAATCTTCAGAGAAAGTGAATAGAGGCATGGTATTGGCACCTCTCGTTGGGATTATGTTAAATTTATTGGATGCTGCTAAGTTGGCAGAGTGTCGGGAGAACAGTGATCTTGTGGATGTTTTTCTAAGCATGGATTGTCCAGATACTGTTCTTTATGGTTTCCAATATCTTGTGAATTATAACTGGGATGAATCATGTCGGGGAGAAGCATACATGGAAAAATATAAACAGCTAGAAAACTTTCTGACCCTCCTTGCTTGCCGCGCTATGTCTGAACGCGATGAAGTGAACAGTGTTATAGATTCAGACCTTGATGATAACTTATGCTGCATATGTTATGCATGTGAAGCAGATACCCAGATTGCACCTTGTTCACATAGGTCTTGCTATGGCTGTGTAACCAGGCATCTTTTGAACTGTCAAAGGTGTTTCTTTTGCAATGCTACAGTGACAGATGTTAGTAGAATTAATGAGAAGACAGGCTAA 3801 0.4099 MAEDSLRLGGFSAGLAVILNGEDTKKKLLKTRFLSCSDDFGEQSVERTLEYVFGLPNRSLNSLDGPVDSSFIHSVIRNVFLRCNADIDDSSSERDMICRPDVVGLEESSICGDIKIIKTPFLIESLELFSSARVNTCVWKGKWMYEVLLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKGAETYGQSWVVGDVIGCCIDLEQGEIIFYRNGSSLGTAFRGIQKMGPGFGYHPAISLSEGERCELNFGARPFKYPIEGYRPLQAPPSKCYFVTRLLQCWSRLLDMHSVERAEHSLAQKLRRAKRFVSLEVIFRPVSYAICEELFCILEENVGHTEYMVWGPLLSFIFEVFKLHAPHDYSSLDKVVDVLLQFQGSHVLFETIINALSRACKMAQFVLTECPYSGSYPYLALVCHLLRREELMVLWWKSPDFEFLFEGLMSRKTPNKQDLDSLIPTVWWPGSCEDACCEGNMMLATTALSESISKIEEKHRDLCRLVIQFIPPMAPPQLPGAVFRTFLQNLLLKNRGAERNVPPPGVSSNSVLISIYTVLLHFLSEGFALGDICGWLKSYKSDVGFLHRGGQRSFPIHLFLRNDPHRTDISRLGGSYTHLSKLHSVIDREREVVQWDEGCMDNEQIRVTHSTKQKPCCCSSYDSEFARNSKVPAKYLAKGSRGHCSSIPERPAHVAAECSDGSLNDEIADKPSSSDQSEPEYGYRQVHHLKSVPKDIDMCIDMLQEEELLDALLCLYQFGLAPNFKQASYYMTHQAQSISLLEETDKQIRDRACGEKLKHLKEARNEYREEVIDCVRHCAWYRISLLSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYTPEYYLEALVDCFHVLRKSDPPFVPSTILIKHGLVSFVTFVVTHFNDPRISSADLRDLLLQSISALVQYREYFAVFESNEAANQRLPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSILFQRLLKEACINDEGLFSSFLNRLFNILSWSMTEFSVSVREMQEKYQVMEFQQKKCGVIFDLSCNLARILEFCTHEIPQAFLSGPETNLRRLTELVVFILNNITSSADAEFFDLSLRRHNQSSEKVNRGMVLAPLVGIMLNLLDAAKLAECRENSDLVDVFLSMDCPDTVLYGFQYLVNYNWDESCRGEAYMEKYKQLENFLTLLACRAMSERDEVNSVIDSDLDDNLCCICYACEADTQIAPCSHRSCYGCVTRHLLNCQRCFFCNATVTDVSRINEKTG 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03090 1266 ProSiteProfiles B30.2/SPRY domain profile. 65 263 IPR001870 -
Vifa2g03090 1266 CDD SPRY_RNF123 131 259 IPR035773 -
Vifa2g03090 1266 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 131 IPR045737 -
Vifa2g03090 1266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1208 1263 IPR013083 -
Vifa2g03090 1266 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 94 1264 IPR045129 GO:0004842
Vifa2g03090 1266 FunFam E3 ubiquitin-protein ligase RKP 112 286 - -
Vifa2g03090 1266 Gene3D - 118 288 IPR043136 -
Vifa2g03090 1266 Pfam Ubiquitin elongating factor core 761 951 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Vifa2g03090 1266 SUPERFAMILY RING/U-box 1208 1257 - -
Vifa2g03090 1266 SMART SPRY_3 140 262 IPR003877 GO:0005515
Vifa2g03090 1266 CDD RING-HC_RNF123 1212 1255 - -
Vifa2g03090 1266 SUPERFAMILY Concanavalin A-like lectins/glucanases 126 275 IPR013320 -
Vifa2g03090 1266 FunFam E3 ubiquitin-protein ligase RNF123 1205 1262 - -
Vifa2g03090 1266 Pfam SPRY domain 142 260 IPR003877 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03090 K12169 - gmx:100800617 2192.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03090 2 883497080 883506467 Vifa2g03090 2 883497080 883506467 ECH