Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03065 ATGGGGAAGAAGCAGATACAGAACAAAACTGTTTTGATGCACTTGCTCATTCTCTTCCTCTATGCTTCATCTGTTACCGTATCAGCAAGAATGGCACCTCTCTTGCAAAATTACGGCAATTCCATTTTCAGATCAAGTTTTCATACTATTTATGATACTTCTAACTACGGTCTTCTTCAGATCAATAATGGTTTGGCTCTCACGCCTCAGATGGGGTGGAACAGCTGGAACTTCTTTGCATGCAATATCAATGAAACTGTTATTAGGGAAACAGCTGATGCACTGGTATCTACGGGATTGGCTGAGTTAGGTTACGACTATGTCAATATAGATGATTGTTGGTCTTCTGTCACAAGAAATTTGAAGGGCGACCTGGTACCTGATCGCAAGACATTTCCATCAGGAATCAAATCACTTGCGGATTATGTGCATGGAAAGGGACTCAAGCTTGGTATATATTCTGATGCTGGGGCTTTTACATGTCAAGTCCGACCAGGATCAATTTTCCACGAAAATGATGATGCAGAATTATTTGCTTCTTGGGGCATAGATTATTTGAAGTACGACAATTGTTACAATCTGGGCATCCCTCCAAAAAAACGATATCCACCTATGCGTGATGCCCTCAATGACACTGGACGTAAAATTTTCTATTCTATTTGTGAATGGGGCGTTGACAACCCTGCTTTGTGGGCAGGCAAGATTGGTAATAGTTGGCGCACAACCAATGACATCAATGACACATGGGCAAGCATGACAACTATTGCCGATCTTAATGACAAGTGGGCTGCATATGCGGGTCCTGGAGGATGGAATGACCCAGATATGCTGGAAGTTGGCAATGGTGGCATGACTTACCAGGAGTACCGTGCTCACTTTAGCATCTGGGCCTTAGCAAAGGCTCCTCTATTGATTGGTTGCGATGTAAGAAATATGACTGCTGAAACACTTGAGATTTTAAGCAACAAAGAAGTCATTGCTATAAATCAAGACTCACTTGGAGTCCAGGGAAGGAAAGTTCAAGTTGCTGGAATAGATGGTTGTGCTCAGGTTTGGGCAGGTCCTTTATCAGGACACCGTTTGGCCGTTGCTCTATGGAATCGATGCTCAAAAGTTGCCACTATAACAGCTTCATGGAAATCACTTGGGCTTGAATCTGGAATTCATGTTTCTGTGAAGGATTTGTGGCAGCACAAGGTAATAAAAAGAGACGTAGTTTCATTGTTCAGTGCTCAAGTTGATTCTCATGATGCTCATTTGTACATTTTCACTCCATCTACGGCATCTTACTCTGCACAGTAA 1302 0.4255 MGKKQIQNKTVLMHLLILFLYASSVTVSARMAPLLQNYGNSIFRSSFHTIYDTSNYGLLQINNGLALTPQMGWNSWNFFACNINETVIRETADALVSTGLAELGYDYVNIDDCWSSVTRNLKGDLVPDRKTFPSGIKSLADYVHGKGLKLGIYSDAGAFTCQVRPGSIFHENDDAELFASWGIDYLKYDNCYNLGIPPKKRYPPMRDALNDTGRKIFYSICEWGVDNPALWAGKIGNSWRTTNDINDTWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLIGCDVRNMTAETLEILSNKEVIAINQDSLGVQGRKVQVAGIDGCAQVWAGPLSGHRLAVALWNRCSKVATITASWKSLGLESGIHVSVKDLWQHKVIKRDVVSLFSAQVDSHDAHLYIFTPSTASYSAQ 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03065 433 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 15 425 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 FunFam Alpha-galactosidase 61 333 - -
Vifa2g03065 433 Pfam Alpha galactosidase A 68 331 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 Gene3D - 334 426 IPR013780 -
Vifa2g03065 433 PRINTS Glycosyl hydrolase family 27 signature 99 114 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 PRINTS Glycosyl hydrolase family 27 signature 140 161 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 PRINTS Glycosyl hydrolase family 27 signature 287 308 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 PRINTS Glycosyl hydrolase family 27 signature 63 82 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 PRINTS Glycosyl hydrolase family 27 signature 266 285 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 PRINTS Glycosyl hydrolase family 27 signature 201 219 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 PRINTS Glycosyl hydrolase family 27 signature 174 191 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 SUPERFAMILY Glycosyl hydrolase domain 326 425 - -
Vifa2g03065 433 CDD GH27 69 331 IPR002241 GO:0004553|GO:0005975
Vifa2g03065 433 ProSitePatterns Alpha-galactosidase signature. 104 120 IPR000111 GO:0004553|GO:0005975
Vifa2g03065 433 Gene3D Aldolase class I 61 333 IPR013785 -
Vifa2g03065 433 FunFam Alpha-galactosidase 334 426 - -
Vifa2g03065 433 Pfam Alpha galactosidase C-terminal beta sandwich domain 347 422 IPR041233 -
Vifa2g03065 433 SUPERFAMILY (Trans)glycosidases 60 331 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03065 Vifa-Chr2 872207464 872211732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03065 15 431 Glycoside Hydrolase AT3G56310 70.449 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03065 K07407 - gmx:100784072 766.918