Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02861 ATGGAGAGGTCTAGATCTAAACGGAATTACTACTATGACCATGAATATGATTCTGAAACCTTTGCGAGAACTAGGCCACGCTATAACCCCCACAACCACCACCATACCAGCTCCTACCGCCACCGTGGCGCCGGTGAACGCGGCGGAGATCGCGGCGGCGGACGACATGTTAAGACCCATGACTCACCGTTAACGGTGACTACTAGTTACCGCATTCTTTGCCAGGACTTGAAGGCCGGCGGTGTGATTGGGAAGTCTGGCTGTATTATTAAGTCGATTAGACAGCACACCGGCGCGTGGATCAACGTGCATGAGCCGGTAGCTGGAGATGAGGAGCGGATTATCGAGATTTCTGACACGCGCCGGCGGGATCCGGATGGGAGGATGCCGTCGTTTTCGCCGGCGCAGGAGGCGTTGCTGCTGATTCATGACAGGATTTTAGAGAGCGATCCGGGGTTTGGCGAGGACGAGGATGAGTACGGTGGCGGAAGAGGTGGTGGTGGGGGCAAGCGGGTGTCTAGTAGGTTGATTGTTTCGAAAATGCATGTTGGATGTTTGTTGGGAAAAGGAGGGAAGATAATTGAACAAATGAGGATTGAAACGAAGACACAAATTAGGATTCTACCTAGAGATCACAATCTACCTCGCTGTGTTGCCTTGTCTGAAGAGATTGTTCAGGTTTCAGGGGACATTCATAATGTGAAAACTGCTTTTCAAATCATATCTTCCCGGTTGAGGGAGAGTCAGCATCGAGACCGTAGTTTGGGTGCTGGTGGTGGTGGTCATTTCCATGGACGAGGATATTCGCCAGAGCGTTATTACACCCCTGATGATGATTATGTTCCTCATCTGACTGGTGGTTCGAGGAGATCATCTGTGGAGAGGGCTGGTTTTGGATCTCGAGCAGCTAACACCAATTCCAGAAACAATAACCGGAACTCGTTAGGTTATGCAATGGATAGAGGGGTTTCTCCTGTGGCTGATGATGGACAACCCGTCTATGAGGCCCTTGTTTTTCGTATACTTTGTCCAGTTGATAGAGTTGATCGTATTGTTGGGGAATCAGATGGAATTATGGGGCTTCTTCAGAATGAAGTTGGCGTAAATGTTAAGGTCGCTGATCCTGTTGGCGGTTCAGATGAACAGATGGTTATCATTACTTCAGACGAGGGTCCCGATAATTCGATGTTCCCAGCTCAGGAAGCTCTGTTACATATACAAACCTGCATTGCTGATCTTGTTCTAGATAGGGATAATATAATTACCACCAGGCTTGTTGTCCCTAGAAGGGACATTGAATGCTTAGATGGGAGCAATGCATCACTGTCTGAAATAGGGAGGTTGACTGGTGCAAGTATTCAAAGATTGCCTAGAGAAGAACTACCGCCCTGTGTTGCAAACACTGATGAATTGGTTCAGATTGTGGGAGAGATAAAAGAAGCTCGGGATGCTGTTCTTGATGTGACTTCAAGATTAAGAAGTTATGTCTATAGGGATTTCTCGCAAAGGGACACAGTACCTCCATCTGCCCCCTTTCCTGGTGTGGAGGCATCTTCTCATAATATGGCTACAATTGCTGAAACTGCCACTAGCAATCAAAATGTGCAAAGTGTGGCAGTAGCCCTTGCGTCAAAGGAAACTGGAGGATCTAGCACTGAGTCGGGAAAGCAGAAAGAAAATGACCGCCGTGATGATCTGCCTAGTGGTTTAAATAGGACCGTGTCTCTTGTCACGAGGAGTATACTTGAAGTTGTCATACCCGAGTATGCAGTTCCAAAGCTTTTAGCAAAATCTAAAAGCAAGCTTGCCCAGATAAGTGAGTTATCGGGAGCCAGTGTAACGCTTATAGAGGATAGACCAGATGAGAAAGAGAATATTATTCAGTTATCCGGTACTCCAGAGCAGGCAGAGAGAGCGCAGAGCTTGCTCCAGGGATTTATTTTGAGCACCCAAGAAGATGGTCCTTAA 1968 0.4756 MERSRSKRNYYYDHEYDSETFARTRPRYNPHNHHHTSSYRHRGAGERGGDRGGGRHVKTHDSPLTVTTSYRILCQDLKAGGVIGKSGCIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRMPSFSPAQEALLLIHDRILESDPGFGEDEDEYGGGRGGGGGKRVSSRLIVSKMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVALSEEIVQVSGDIHNVKTAFQIISSRLRESQHRDRSLGAGGGGHFHGRGYSPERYYTPDDDYVPHLTGGSRRSSVERAGFGSRAANTNSRNNNRNSLGYAMDRGVSPVADDGQPVYEALVFRILCPVDRVDRIVGESDGIMGLLQNEVGVNVKVADPVGGSDEQMVIITSDEGPDNSMFPAQEALLHIQTCIADLVLDRDNIITTRLVVPRRDIECLDGSNASLSEIGRLTGASIQRLPREELPPCVANTDELVQIVGEIKEARDAVLDVTSRLRSYVYRDFSQRDTVPPSAPFPGVEASSHNMATIAETATSNQNVQSVAVALASKETGGSSTESGKQKENDRRDDLPSGLNRTVSLVTRSILEVVIPEYAVPKLLAKSKSKLAQISELSGASVTLIEDRPDEKENIIQLSGTPEQAERAQSLLQGFILSTQEDGP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02861 655 SMART kh_6 170 246 IPR004087 GO:0003676
Vifa2g02861 655 SMART kh_6 578 648 IPR004087 GO:0003676
Vifa2g02861 655 SMART kh_6 419 493 IPR004087 GO:0003676
Vifa2g02861 655 SMART kh_6 66 147 IPR004087 GO:0003676
Vifa2g02861 655 SMART kh_6 335 411 IPR004087 GO:0003676
Vifa2g02861 655 MobiDBLite consensus disorder prediction 298 316 - -
Vifa2g02861 655 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 336 392 IPR036612 GO:0003723
Vifa2g02861 655 Gene3D K Homology domain, type 1 579 650 IPR036612 GO:0003723
Vifa2g02861 655 ProSiteProfiles Type-1 KH domain profile. 171 241 - -
Vifa2g02861 655 MobiDBLite consensus disorder prediction 24 61 - -
Vifa2g02861 655 ProSiteProfiles Type-1 KH domain profile. 67 139 - -
Vifa2g02861 655 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 64 118 IPR036612 GO:0003723
Vifa2g02861 655 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 569 649 IPR036612 GO:0003723
Vifa2g02861 655 MobiDBLite consensus disorder prediction 543 569 - -
Vifa2g02861 655 Gene3D K Homology domain, type 1 172 248 IPR036612 GO:0003723
Vifa2g02861 655 ProSiteProfiles Type-1 KH domain profile. 579 643 - -
Vifa2g02861 655 CDD KH-I_PEPPER_rpt1_like 67 140 - -
Vifa2g02861 655 MobiDBLite consensus disorder prediction 39 58 - -
Vifa2g02861 655 Gene3D K Homology domain, type 1 64 171 IPR036612 GO:0003723
Vifa2g02861 655 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 252 IPR036612 GO:0003723
Vifa2g02861 655 Pfam KH domain 582 644 IPR004088 GO:0003723
Vifa2g02861 655 Pfam KH domain 175 242 IPR004088 GO:0003723
Vifa2g02861 655 Pfam KH domain 70 118 IPR004088 GO:0003723
Vifa2g02861 655 ProSiteProfiles Type-1 KH domain profile. 336 403 - -
Vifa2g02861 655 CDD KH-I_PEPPER_rpt2_like 173 246 - -
Vifa2g02861 655 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 330 643 - -
Vifa2g02861 655 Gene3D - 336 496 - -
Vifa2g02861 655 MobiDBLite consensus disorder prediction 249 316 - -
Vifa2g02861 655 CDD KH-I_PEPPER_rpt1_like 337 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02861 Vifa-Chr2 811910294 811913876 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02861 K21444 - gmx:100804167 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02861 2 811910294 811913876 Vifa2g02861 2 811910294 811913876 ECH