Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02860 ATGGAAACTTCACTTTCTGTTCCTTCTCCATTTTTATCTGCATTCAGGACAAACAAAGAGCTTCCCCATGTTCTGTCACTTGAGTTCAAAAGAATAACATGCTTTTCGGGTTGTGATAAAAAACAAAGTTACAATGAAAACGTTTATGTTATACCCATTCGAACCGTGTCTCGATTCTGCATTTCAAGGTCTTTTGCTAGGTCATTGGAACTTGGAGGGACAGGACCACCGCATAGTGATGTTCATTCACCTCCAAACTATAATCAGAGCAGCTTTGAGAAAGATTTGGAAGAATTATTTGGTGAAGTGAAAAAAATGATCCAGATGGGGAAGAAAAATGACGCCATAGATCTGCTTAATGCGAATTATGAAATGGTGAAAGAGAGGCTTAGTGTAGGCACTAAAGGAATAGAAGAAGCTGCTATCTTAGACATACTTGCACTCGGTTATATAGCTGTTGGAGACTTGAAATTTGTTGGTTATCTATTGAATTTGTTGAAAGATGTTGTTGATACCTTAAAGGATGATGCACCACATCTAAGTTCAATACTTATGCATATGGGAAGTATGTATGCGACATTGAACAAGTTTGAAGAGTCACTAGACACGTATCAAAGGGCTGTCTACATTGTGGAAAGGATTTACGGTAAGGATAGCACTATTCTTGTCACGCCCCGTTTGGGTATGGCAAAAGCTCATGGTTCAATGGGAAAAGCCACAAAAGCAATAGAGATATACCAACATGTAATCACGCTTTTGGAATCAAATAAAGGTGTTGAAAGTAAGGATTTGGTAGTACCTTTACTTAGTCTTGGAAATCTTTTACTGAAAGAAGGAAAAGTCGATGATGCTGAAAGTCGTTTTACTAGGGTTCTTAACATTTACACAAAAGTATATGGAGAAAATGATGGGAGAATTGGAATGGCTATGAGTTCCCTAGCCCAAGTAAAGTGTGCTCTAGGGAAGTCAAGTGAAGCAATTGATTTACTCAAAAGTGCTCTTAAGGTCATGAAGGATTCAAATTACATGTCACTGGATAACAGTATGTTGGAGAAAATGAGGCTAGATCTAGCTGAATTACTCCATACCTCTGGGAGAGGACAAGAAGGCAGAGAGATATTAGAGGAGTGCCTATTGATCACAGAGAGGTACAAAGGAAAGGAGCATCCTAGCTTAGCAAGACACATGATAAATCTCGCAACTTCGTACACACGGTCAAAGAGTTACGCTGAGGCAGAGCATTTGCTGAGAAGAAGTTTGCAAATCATGATAAAGCATAAGGGAACTGATGATCAGTCCATCAGCTTCCCTATGTTGCAACTTGCAGCTACACTATACCATTTAAAAAATGACGAAGAAGCAGAGAAACTCGCCCTAGAGGTTTTGCGCATCCGCGAAAAGGCATTTGGAGAAGATTCTCTTCCTGTTGGGGAGGCTTTGGACTGCTTAGTGTCTATTCAAACCAGACTTGGTAAAGATGACAGAGATTTACTGGAGGTGGTTAGAAGGATACTGAGTATCCAAGAGAAAGGATTCGGATATGAGAGTGAGCAAGTTTTGCTTACCTTGAACAAAATTGTATACTACTTAGATAAGTTAGGGAGAAAAGATGAAAAACTTCTTCTGCAGAGAAGGCTATATGTGCTTAGGAAGAAATATAAGCACATGGTTAATCACTAA 1680 0.3923 METSLSVPSPFLSAFRTNKELPHVLSLEFKRITCFSGCDKKQSYNENVYVIPIRTVSRFCISRSFARSLELGGTGPPHSDVHSPPNYNQSSFEKDLEELFGEVKKMIQMGKKNDAIDLLNANYEMVKERLSVGTKGIEEAAILDILALGYIAVGDLKFVGYLLNLLKDVVDTLKDDAPHLSSILMHMGSMYATLNKFEESLDTYQRAVYIVERIYGKDSTILVTPRLGMAKAHGSMGKATKAIEIYQHVITLLESNKGVESKDLVVPLLSLGNLLLKEGKVDDAESRFTRVLNIYTKVYGENDGRIGMAMSSLAQVKCALGKSSEAIDLLKSALKVMKDSNYMSLDNSMLEKMRLDLAELLHTSGRGQEGREILEECLLITERYKGKEHPSLARHMINLATSYTRSKSYAEAEHLLRRSLQIMIKHKGTDDQSISFPMLQLAATLYHLKNDEEAEKLALEVLRIREKAFGEDSLPVGEALDCLVSIQTRLGKDDRDLLEVVRRILSIQEKGFGYESEQVLLTLNKIVYYLDKLGRKDEKLLLQRRLYVLRKKYKHMVNH 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02860 559 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Vifa2g02860 559 Pfam MalT-like TPR region 174 462 IPR041617 -
Vifa2g02860 559 SUPERFAMILY TPR-like 107 255 IPR011990 GO:0005515
Vifa2g02860 559 Gene3D Tetratricopeptide repeat domain 351 558 IPR011990 GO:0005515
Vifa2g02860 559 SMART tpr_5 307 340 IPR019734 GO:0005515
Vifa2g02860 559 SMART tpr_5 393 426 IPR019734 GO:0005515
Vifa2g02860 559 SMART tpr_5 435 468 IPR019734 GO:0005515
Vifa2g02860 559 SMART tpr_5 181 214 IPR019734 GO:0005515
Vifa2g02860 559 SMART tpr_5 265 298 IPR019734 GO:0005515
Vifa2g02860 559 SMART tpr_5 223 256 IPR019734 GO:0005515
Vifa2g02860 559 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 96 536 - -
Vifa2g02860 559 SUPERFAMILY TPR-like 241 464 IPR011990 GO:0005515
Vifa2g02860 559 Gene3D Tetratricopeptide repeat domain 153 350 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02860 - - aprc:113852595 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02860 2 811765742 811768595 Vifa2g02860 2 811765742 811768595 ECH