Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02849 ATGAGAGTAGTACATGCAGGGAAAACTACTACTGACACTCCTCGAGGAGAATTAAGGATTGATGAAGTTGCAAAACCGGAGGATAAAAATGTAGGAGAAGATAAGGCTGAGATTAGAGTGTCTCACAACATTGTTTTTGTTACATCTGAAGCTGCACCGTATTCTAAGACCGGTGGACTTGCTGATGTTTGTGGTTCTTTGCCAATAGCGCTGGCAGGTCGTGGACATCGAGTTATGGTTATCTCTCCTAGATACCAACATGGTAATGCTGCAGATAAGAAGTTTTCTAGTGCGGTTGATCTTGATAGAAATATCAATGTATTTTGCTTTGGTGCTGCTCAAGAAGTTGGTTTTTTTCATGAGTACAGGGAAGGGGTTGATTGGGTATTTGTTGATCACCCTTCATTCCATAGACCAGGGAATCCTTATGGGGACAAGATTGGGACTTTTGTGGATAATCAGTTTCGGTTCACTTTACTTTCCCATGCAGCATGTGAAGCCCCATTGGTGCTTCCATTGGGAGGTTTCACTTATGGAGAAAAATGTATATTCCTCGTAAATGATTGGCATGCCAGCCTGGTTTCAGTACTTTTGGCAGCCAAGTATCGTCCATATGGGGTATATAAGGATGCACGTAGTATATTAGTGATTCACAATATTGCACACCAGGGAGTGGAACCTGCAATTACATATAGCAATTTGGGGCTGCCTCATGAATGGTATGGGGCTCTAGGATGGGTGTTCCCTACATGGGCGAGAACGCATGCTCTTGATACAGGCGAAGCTGTCAATTTTCTAAAAGGCGCCATTGTTACATCTGATCGGATAGTAACAGTAAGCAAGGGCTATTCATGGGAGATAACAACTAATGAAGGTGGATTCGGTCTACATGAAATATTACGCGATAGAAAAAGTATTCTCAGCGGAATCACAAATGGAATTGATGTTACTGAATGGGACCCATCATCTGATGAACATCTTGCTAGCAACTACTCAGCTGAAGATCTTTCTGGGAAGGTGAAATGTAAGGTTGCCTTGCAGAAGGAATTGGGTCTTCCAGTAAGGCCTGACTGTCCGATGATTGGATTTGTTGGAAGACTTGATTACCAGAAAGGTATTGAGCTGATTCGCCAGGCAACTCCAGAGCTTATGATAGATGATGTTCAGTTTGTTATGCTTGGTTCAGGAAATCCTATTTATGAAGAATGGATGAGAGCAACAGAGTCAATTTATAAAGATAAATTTCGTGGTTGGGTTGGATTTAATGTTCCAGTATCTCATAGAATAACTGCAGGCTGTGATATACTGTTAATGCCGTCAACATTCGAGCCATGTGGATTAAATCAGTTGTATGCAATGAGATATGGAACTATACCAGTGGTTCATGAAACTGGGGGACTAAGAGATACAGTTCAAAATTTTAATCCATTTGGCGTAGGAAGCAATGCTGAAGGATGCAATGCTGAAGGCACAGGGTGGACGTTTACTCCGCTGACAAAGGAGAGCATGTTAGTGGCTCTAAGATACGCCATTCAAACATATAACGAACACAAGTCTTCATGGGAGGGATTAATGAAAAGAGGTATGATGAGAGATTACACGTGGGAAAACGCTGCCACTCAATACGAGCAAATCATTGAGTGGGCATTCATGGATCCACCCTATTGCTGA 1671 0.4219 MRVVHAGKTTTDTPRGELRIDEVAKPEDKNVGEDKAEIRVSHNIVFVTSEAAPYSKTGGLADVCGSLPIALAGRGHRVMVISPRYQHGNAADKKFSSAVDLDRNINVFCFGAAQEVGFFHEYREGVDWVFVDHPSFHRPGNPYGDKIGTFVDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCIFLVNDWHASLVSVLLAAKYRPYGVYKDARSILVIHNIAHQGVEPAITYSNLGLPHEWYGALGWVFPTWARTHALDTGEAVNFLKGAIVTSDRIVTVSKGYSWEITTNEGGFGLHEILRDRKSILSGITNGIDVTEWDPSSDEHLASNYSAEDLSGKVKCKVALQKELGLPVRPDCPMIGFVGRLDYQKGIELIRQATPELMIDDVQFVMLGSGNPIYEEWMRATESIYKDKFRGWVGFNVPVSHRITAGCDILLMPSTFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQNFNPFGVGSNAEGCNAEGTGWTFTPLTKESMLVALRYAIQTYNEHKSSWEGLMKRGMMRDYTWENAATQYEQIIEWAFMDPPYC 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02849 556 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 34 555 - -
Vifa2g02849 556 NCBIfam glycogen/starch synthase, ADP-glucose type 43 546 IPR011835 GO:0004373
Vifa2g02849 556 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 41 550 - -
Vifa2g02849 556 CDD GT5_Glycogen_synthase_DULL1-like 43 548 - -
Vifa2g02849 556 FunFam Starch synthase, chloroplastic/amyloplastic 43 328 - -
Vifa2g02849 556 Gene3D Glycogen Phosphorylase B; 62 545 - -
Vifa2g02849 556 Hamap Glycogen synthase [glgA]. 42 549 IPR011835 GO:0004373
Vifa2g02849 556 Pfam Starch synthase catalytic domain 43 301 IPR013534 -
Vifa2g02849 556 Gene3D Glycogen Phosphorylase B; 316 532 - -
Vifa2g02849 556 Pfam Glycosyl transferases group 1 359 514 IPR001296 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02849 Vifa-Chr2 807113864 807119503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02849 43 546 Glycosyltransferase AT3G01180 49.706 2.44e-165 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02849 K00703 - gmx:100807354 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02849 2 807113864 807119503 Vifa2g02849 2 807113864 807119503 ECH