Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02829 ATGATTACCCAACACCCACGCGTCGCCGCCACCACCACCAATCAAGTAATCAAATCAATCACCAACTTGCTAAAAGTGGGTCAAATACAAAAAGCCGCATCCATTCTCTTCGCATTCCCACTACCCTTCCCTCACTCTCTCTACGCCCACTTCTTCCGTCATTGTACCTCCCCAAAAGCCATCGTTGCAGCTCATAAGGTCGAGTTCCACTTGGTCGCCACCACTCCTAACCCACCCACATTCCTCCGCAACCGCGCCCTCGAAGCCTATGCTAAATGCTCATCTCTCCATGACGCCCGGGAACTGTTTGACCAAATGCCTTACAGAGATGGTGGCTCTTGGAATGCCTTGATAACCGCTTATTCTCGATTAAGCTACCCGCATGAAGCACTTTCGTTGTTCCTTTGCATGAATAGGTCTGCTGTTCGTGCTAATAATATCACCTTTGCCGGTGTTCTTTCCTCATGTGCTGCTGTTTCTCAGCTTCCTCTCTCCCAACAGCTTCATGGGCTTGTTGTGAAATTTGGTTTTTGTGGCAATGTGATCATTGGGAGTGCTCTTGTTGATGTTTATGCTAAATGTGGGGTTATGGTATATGCTCGCAGGATGTTTTATGAAATGCCCCGTCGCAATGCTGTCACTTGGAATGTTATTGTGAGAAGGTATCTTGATGTTGGGGATGCAAAGGAAGCTGTTTTCTTGTTCACTCAAATGTTTTCTGCTGGAGTTAAGCCTTTGAATTTTACATTCTCTAATGCTCTTGTTGCTTGTTCGAGTATGCACGCGCTTGAGGAGGGGATGCAAATTCATGGGGTTGTTGTGAAATGGGGACTCCGTGAGGATAACGTTGTTTCGAGTTCTCTAATCAATATGTATGTCAAGTGTGGTGAATTGGAGAGTGGTTCTCACGTTTTTTATCAGCTTGTTTCCAAAGATTTGGTGTCGTGGACTTGCATTGTGTCAGGGTATGCAATGAGTGGTAAAACCTGGGATGCCAGAAGGCTTTTTGATCAGATGCCTGAACGAAATGTGATCTCGTGGAATGCTATGTTGGCCGGATATACCCGATTCTTTAAATGGTATGAGGCATTAGATTTTTTGGGTTTGATGCTTGACGCTGTTAAGGACTTGGATCATGTCACTCTTTGTTTGATGTTAAATTTGTCTGCGGGACTTTCGGATCATGAAATGGGGAAACAGACTCATGGCTATGTTTATCGACGTGGTTTTCACTCAAACCTTATGGTTGGCAATGCCCTTCTTGACATGTATGGTAAATGCGGGAACTTGAACGGTGCCAGAGTATGGTTTAATCTGATGAGTAATTGGCGTGACATGGTTTCTTGGAATGCTTTATTGGCTAGCTACGGTCATCATCATTTAAGCGAACAAGCACTTACAATGTTTTCAGAGATGCAATGGGAAGCGAAACCAAGCAAGTATTCTTTTGGAACCCTTTTGGCAGCATGTGCAAATACTTATGCTCTACGCCACGGCAAACAAGTTCATGGATTCATCATTAGACATGGATTTCAGATAGATACTGTAATCAGGACTGCTTTGATTTACATGTACTGTAAATGCTACTGTCTTGAGTATGCTGTTGAAGTTCTGAAAGGTACAGTCTCCAGGGATGTGATAATGTGGAATACGTTAATTTTGGGATGTTGTCACAATCATAGGGGAAGAGATGCACTTGAACTTTACGGGATAATGGAAGCAGAAGGCATCAAGCCAGACCACGTGACCTTTGAGGGAATTCTTCTTGCTTGTGTTGAAGAAGGCCTTGTTGATTTTGGCACCCATTGCTTCAAGTCTATGAGCAATGAATACCTTGTCCTGCCTCAGATGGAGCATTATGACTGCATGATTGAACTCTACAGTCGGCATGGATGCATGGATGAGCTCGATAGTTTTTTAAAAACAATGACAATAGAGCCTACTCTTCGCATGTTGGAACGAGCCCTTGATGCTTGTCAGAAACATGAGTCTCCAAGACTGGGTGAATGGATTGCTGAAAAAATTAATAAATTTGAACATTAA 2043 0.4366 MITQHPRVAATTTNQVIKSITNLLKVGQIQKAASILFAFPLPFPHSLYAHFFRHCTSPKAIVAAHKVEFHLVATTPNPPTFLRNRALEAYAKCSSLHDARELFDQMPYRDGGSWNALITAYSRLSYPHEALSLFLCMNRSAVRANNITFAGVLSSCAAVSQLPLSQQLHGLVVKFGFCGNVIIGSALVDVYAKCGVMVYARRMFYEMPRRNAVTWNVIVRRYLDVGDAKEAVFLFTQMFSAGVKPLNFTFSNALVACSSMHALEEGMQIHGVVVKWGLREDNVVSSSLINMYVKCGELESGSHVFYQLVSKDLVSWTCIVSGYAMSGKTWDARRLFDQMPERNVISWNAMLAGYTRFFKWYEALDFLGLMLDAVKDLDHVTLCLMLNLSAGLSDHEMGKQTHGYVYRRGFHSNLMVGNALLDMYGKCGNLNGARVWFNLMSNWRDMVSWNALLASYGHHHLSEQALTMFSEMQWEAKPSKYSFGTLLAACANTYALRHGKQVHGFIIRHGFQIDTVIRTALIYMYCKCYCLEYAVEVLKGTVSRDVIMWNTLILGCCHNHRGRDALELYGIMEAEGIKPDHVTFEGILLACVEEGLVDFGTHCFKSMSNEYLVLPQMEHYDCMIELYSRHGCMDELDSFLKTMTIEPTLRMLERALDACQKHESPRLGEWIAEKINKFEH 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02829 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Vifa2g02829 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Vifa2g02829 680 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 323 679 IPR046960 GO:0003723|GO:0009451
Vifa2g02829 680 FunFam pentatricopeptide repeat-containing protein At2g33680 518 680 - -
Vifa2g02829 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vifa2g02829 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vifa2g02829 680 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 397 497 - -
Vifa2g02829 680 NCBIfam pentatricopeptide repeat 547 580 IPR002885 -
Vifa2g02829 680 NCBIfam pentatricopeptide repeat 314 344 IPR002885 -
Vifa2g02829 680 FunFam Pentatricopeptide repeat-containing protein 127 266 - -
Vifa2g02829 680 Pfam PPR repeat 345 371 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat 619 643 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat 286 312 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat 87 107 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat 314 344 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat 113 139 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat 185 211 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat 213 243 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat 418 441 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat family 545 591 IPR002885 -
Vifa2g02829 680 Pfam PPR repeat family 445 492 IPR002885 -
Vifa2g02829 680 Gene3D Tetratricopeptide repeat domain 597 678 IPR011990 GO:0005515
Vifa2g02829 680 Gene3D Tetratricopeptide repeat domain 265 398 IPR011990 GO:0005515
Vifa2g02829 680 Gene3D Tetratricopeptide repeat domain 498 596 IPR011990 GO:0005515
Vifa2g02829 680 Gene3D Tetratricopeptide repeat domain 163 264 IPR011990 GO:0005515
Vifa2g02829 680 Gene3D Tetratricopeptide repeat domain 399 497 IPR011990 GO:0005515
Vifa2g02829 680 Gene3D Tetratricopeptide repeat domain 7 162 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02829 Vifa-Chr2 790309274 790311316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02829 2 675 Glycoside Hydrolase AT3G49170 27.405 4.09e-83 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02829 - - mtr:25489737 1173.3