Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02828 ATGAGTATGGAGTTGAATGGCGTGTGCCGCACGCTTCGTGAAGCAAGACAACTCCACCGGTCGCTCCTCAAAGACGGTACTTTGCACTCATCCGTCACCACCACCAACCGCCTCCTCCAATTATACTCCCGGCGCGGCTCTCTCCAAGATGCATCTAAGCTGTTCGACGAAATGCCGCAAACAAATGCTTTCTCATGGAACACCCTCATCGAAGCCCACATCAACTCAGGCAACATAAACAAGTCACTGCAATTGTTCTATGCCATGCCCCACAAAACCCAATACTCCTGGAACCTTCTTGTTTCGACGTTTTCCAAATCTGGTGACCTTCAACTCGCTCACACTCTCTTCAACGCCATGCCTGCGAAGAACCCCCTTGTCTGGAATTCCATTATTCATGGTTACTCTAGACATGGGCATCCGAGAAAAGCGCTTTTTCTCTTTAAGGATATGAATTTAGACCCTTCAGAAACGGTGCACCGTGATGCCTTTGTGTTGTCAACTGTTTTCGGGGCATGTGCTGACTTGTTTGCTCTTGATTGTGGGAAACAAGTCCATGCTCGTGTTTTCATTGATGGTTTTGAATTTGAATTTGACAAGATTCTTTGCAGTTCGGTTGTTAATTTCTATGGGAAATGCGGTGATTTGGATAGTGCTGCTCGGGTTGTGGGTTTTGTGAAGGAACTTGATGACTTTTCTTTATCTGCTTTGGTGTCAGGTTATGCAAATGCTGGTAGAATGAGAGATGCAAGAAGGGTTTTTGATAACAAGGTTGATCCTTGTTCTGTGTTGTGGAATTCGATTATTTCGGGTTATGTGTCCAATGGTGATGAAATGGAGGCACTGTCTCTCTTCAACTCAATGCGTAGGAATGGGATTTGGGGAGACTTCTCTTCCGTTGCAAACATTTTGAGTGCTGCTAGTAGCTTGCTCAATGTTGAACTTGTAAAGCAAATGCATGACCATGCTTTTAAAATTGGGGCGACTCGTGATATTGTGGTTTCTAGTGCTTTGCTTGATGCATACTCCAAATGTCAACACTCTCATGAAGCTTGCAAGTTGTTTGGTGATCTCAAAGCCTATGATGCAATCTTGCTTAATACTATGATTACTGTCTATTGTAATTGTGGAAGAATCGAAGATGCAAAATGGATTTTTGACACAATGCCTAATAAAACCCTGATTTCATGGAATTCCATCTTGGTTGGCCTCACTCAGAATGCGTGTCCAAGTGAGGCGTTGGATACTTTTTGTAAGATGAATAAGCTGGATGTGAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCACTGCTTGTGCTAGTAAATCATCCCTTGAACTTGGTGAGCAGGTATTTGCTAAAGCTATTACTTTGGGGCTTGAATCCGACCAAATAATTTCTACCTCACTTGTTGACTTTTATTGTAAATGTGGTCTTGTTGAGATGGGACGAAAAGTTTTTGATGGAATGATAAAAACTGATGAAGTTTCTTGGAATACAATGCTGATGGGATATGCGACAAATGGATATGCGATAAAAGCACTAACCCTTTTTAATGAAATGAGGTATAGTGTTGTGAGGCCTTCTGCGATTACTTTTACTGGTGTTCTTTCAGCCTGTGATCACTGTGGTCTGGTAGAAGAAGGAAGAAATTTGTTCCACACTATGAAGCATGAGTATCATATAAATCCAGGGATTGAACATTACTCTTGCATGGTTGACCTTTTTGCCAGAGCTGGTTGTTTTGGGGAAGCAATGTATCTTATTGAAGAGATGCCTTTTCAGGTTGATGCAAACATGTGGTTATCAGTATTAAGAGGCTGCATATCCTATGGAAATAGGACTATTGGAAAGATGGCAGCAGAGAAAATTATTCAGCTTGATCCTGAAAATCCAGGTGCTTATATACAATTATCTAACATACTTGCAACTTCTGAGGACTGGGAAGGATCAGCAAAAGTAAGAGAGTTGATGAAAGGTAAAAATGTTCAGAAAATTCCTGGTTGCAGTTGGACAGATTGTTGA 2025 0.4168 MSMELNGVCRTLREARQLHRSLLKDGTLHSSVTTTNRLLQLYSRRGSLQDASKLFDEMPQTNAFSWNTLIEAHINSGNINKSLQLFYAMPHKTQYSWNLLVSTFSKSGDLQLAHTLFNAMPAKNPLVWNSIIHGYSRHGHPRKALFLFKDMNLDPSETVHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEFDKILCSSVVNFYGKCGDLDSAARVVGFVKELDDFSLSALVSGYANAGRMRDARRVFDNKVDPCSVLWNSIISGYVSNGDEMEALSLFNSMRRNGIWGDFSSVANILSAASSLLNVELVKQMHDHAFKIGATRDIVVSSALLDAYSKCQHSHEACKLFGDLKAYDAILLNTMITVYCNCGRIEDAKWIFDTMPNKTLISWNSILVGLTQNACPSEALDTFCKMNKLDVKMDKFSFASVITACASKSSLELGEQVFAKAITLGLESDQIISTSLVDFYCKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYAIKALTLFNEMRYSVVRPSAITFTGVLSACDHCGLVEEGRNLFHTMKHEYHINPGIEHYSCMVDLFARAGCFGEAMYLIEEMPFQVDANMWLSVLRGCISYGNRTIGKMAAEKIIQLDPENPGAYIQLSNILATSEDWEGSAKVRELMKGKNVQKIPGCSWTDC 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02828 674 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 90 IPR046960 GO:0003723|GO:0009451
Vifa2g02828 674 Pfam E motif 611 672 IPR046848 -
Vifa2g02828 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 31 65 IPR002885 -
Vifa2g02828 674 FunFam Pentatricopeptide repeat-containing protein chloroplastic 548 672 - -
Vifa2g02828 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vifa2g02828 674 NCBIfam pentatricopeptide repeat 496 522 IPR002885 -
Vifa2g02828 674 NCBIfam pentatricopeptide repeat 569 592 IPR002885 -
Vifa2g02828 674 NCBIfam pentatricopeptide repeat 263 293 IPR002885 -
Vifa2g02828 674 NCBIfam pentatricopeptide repeat 127 151 IPR002885 -
Vifa2g02828 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Vifa2g02828 674 FunFam Pentatricopeptide repeat-containing protein 410 547 - -
Vifa2g02828 674 Pfam PPR repeat 336 359 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 95 123 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 127 151 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 568 592 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 64 90 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 395 423 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 367 391 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 468 492 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 263 293 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 233 255 IPR002885 -
Vifa2g02828 674 Pfam PPR repeat 34 59 IPR002885 -
Vifa2g02828 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Vifa2g02828 674 Gene3D Tetratricopeptide repeat domain 3 92 IPR011990 GO:0005515
Vifa2g02828 674 Gene3D Tetratricopeptide repeat domain 155 292 IPR011990 GO:0005515
Vifa2g02828 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vifa2g02828 674 Gene3D Tetratricopeptide repeat domain 315 442 IPR011990 GO:0005515
Vifa2g02828 674 Gene3D Tetratricopeptide repeat domain 540 666 IPR011990 GO:0005515
Vifa2g02828 674 Gene3D Tetratricopeptide repeat domain 443 539 IPR011990 GO:0005515
Vifa2g02828 674 Gene3D Tetratricopeptide repeat domain 93 154 IPR011990 GO:0005515
Vifa2g02828 674 Pfam PPR repeat family 494 540 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02828 Vifa-Chr2 790304752 790306776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02828 10 673 Glycoside Hydrolase AT3G49170 29.296 2.56e-100 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02828 - - gmx:100790756 1071.61