Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02827 ATGTACCCATTTTTCAAACAAACTCAGTCTCTTCACTCCTCACTTTCTCATTGTTCTACTCTCCTACACCGCTCTTTATCTCATAAATCCTCTAACTTTCTCAAAACAGTCCATGCCCACTTCCTCAAATTGGGTCTTAACACATATACATATCTGGGTAATCGTTGTATCGATCTTTATACCGAATATGGCCACATTAATGATGCCTTGAAGGTGTTTGAGGATATTTCTTATAAGAATTCCACTTCCTGGAACATTTGCTTGAAAGGGTTGTTCAAAAGTGGCCAGATCGGCAAGGCCCGCCACATGTTTGATGAAATGCCTGTTAGAGATGTTGTTAGTTGGAACACTATGATTTCGGGCTATGCTTCTTGTGGGTTTTCTAGTCATGCCTTGGAGCTTTTTGTTGAAATGCAAAGTGTTGGTGTGAGACCGAGTGTGTTCACTTTCTCAATTTTGACGTCGGTGGTGTTGAGTCCTTGTCATGCTAAGGAGGTTCATGGTAGGATGATTAGAAGTTGGATGGATTTGTCTAATGTGGTGATTGGAAATTCGTTGATAACTATGTATGCGAAGTTTGGTCTCGTTGATTATTCTTTTGGCGTGGTTTTTAGTATGAAGCAGCTTGATGTTATATCTTGGAACTCTTTGATATGGGCCTGTCATAGAGCTGGACGCCAAGAGCTTGCTTTAGAGCAGTTCTGTTGCCTGAGAGCTGCTGAGTTGTTGCCTGATCAGTTTACGTGTTCGTCGTTGATGAGTGTCTGTTCCAGCTTGCGAGATTTGGAAAAGGATTGGACGACGCTGTGCGATGCTCTTCAGCTCTTTGTGCTGACCTTGAGGAAGAATATCAGACCAACGGAATATACTGTTAGCTGTCTTCTGAGTTCTGTTTCTGTTTTCTTGCCAGTAGAACTGGGTAATCAAATACATGCTTTGGTTCCTAAGTTGGGGTTCCAGTCAGATACAGTTGTTGCCAATTCACTTGTTGATATGTATGCTAAATTTGGATTTATTGACGATGCCTTGAATATCTTCAACGAAATGAAAGCAAAAGATTTGGTATCATGGAACACTATAATGATGGGACTGTCTTACAATGGTAGAGTGTCTGTGACCATGGATCTCTTCAAGGAAATGATAAGAGAAGGAATGCGACCCGATCGAATAACATTTAAGGCAGTTCTACTAGCATGCAACTATGGGAGTTTGGTTAATGAAGGAACTAAGATATTTTCTCTAATGGAAATGGAATTTGGAGTAAAACCAGAGGAAGAACATTATTCATATGTTGTAGAGATTGTATGTAGAGCTGGTAAAGTCAAAGAAGCCATTGACATTGTGGAAAAAATGTCGTGTGGAACCACCCCTGACATTTGGAGGTCAATTATTTCTGCGTGTGCAAGATATGGAGACTTGCAAGCTACTGAAATAGTTGCAACAAAAATAATGGAGAGGTCACCACAGACATCCTTACCATACTTGGTGTTGGCTCAGGTATATCAGATGAGTGGTCGTTGGGAGAGCACGGTTCGAGTGAGGAAGGCTATGCAACATAGAGGTAGTAAAGAGCTCATTGGATACAGTTGGGTGGGAATAAAAAACCATTTGGAGGGGAATACGGATATTTGA 1632 0.4105 MYPFFKQTQSLHSSLSHCSTLLHRSLSHKSSNFLKTVHAHFLKLGLNTYTYLGNRCIDLYTEYGHINDALKVFEDISYKNSTSWNICLKGLFKSGQIGKARHMFDEMPVRDVVSWNTMISGYASCGFSSHALELFVEMQSVGVRPSVFTFSILTSVVLSPCHAKEVHGRMIRSWMDLSNVVIGNSLITMYAKFGLVDYSFGVVFSMKQLDVISWNSLIWACHRAGRQELALEQFCCLRAAELLPDQFTCSSLMSVCSSLRDLEKDWTTLCDALQLFVLTLRKNIRPTEYTVSCLLSSVSVFLPVELGNQIHALVPKLGFQSDTVVANSLVDMYAKFGFIDDALNIFNEMKAKDLVSWNTIMMGLSYNGRVSVTMDLFKEMIREGMRPDRITFKAVLLACNYGSLVNEGTKIFSLMEMEFGVKPEEEHYSYVVEIVCRAGKVKEAIDIVEKMSCGTTPDIWRSIISACARYGDLQATEIVATKIMERSPQTSLPYLVLAQVYQMSGRWESTVRVRKAMQHRGSKELIGYSWVGIKNHLEGNTDI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02827 543 Pfam Pentatricopeptide repeat domain 208 256 IPR002885 -
Vifa2g02827 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 352 IPR002885 -
Vifa2g02827 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 110 IPR002885 -
Vifa2g02827 543 Pfam PPR repeat family 352 398 IPR002885 -
Vifa2g02827 543 Pfam PPR repeat family 110 153 IPR002885 -
Vifa2g02827 543 NCBIfam pentatricopeptide repeat 113 146 IPR002885 -
Vifa2g02827 543 NCBIfam pentatricopeptide repeat 326 355 IPR002885 -
Vifa2g02827 543 NCBIfam pentatricopeptide repeat 355 388 IPR002885 -
Vifa2g02827 543 NCBIfam pentatricopeptide repeat 83 112 IPR002885 -
Vifa2g02827 543 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 324 541 - -
Vifa2g02827 543 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 271 536 IPR046960 GO:0003723|GO:0009451
Vifa2g02827 543 Gene3D Tetratricopeptide repeat domain 7 158 IPR011990 GO:0005515
Vifa2g02827 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Vifa2g02827 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vifa2g02827 543 Pfam PPR repeat 428 451 IPR002885 -
Vifa2g02827 543 FunFam Pentatricopeptide repeat-containing protein At3g49710 25 163 - -
Vifa2g02827 543 Gene3D Tetratricopeptide repeat domain 159 300 IPR011990 GO:0005515
Vifa2g02827 543 Gene3D Tetratricopeptide repeat domain 304 403 IPR011990 GO:0005515
Vifa2g02827 543 Gene3D Tetratricopeptide repeat domain 404 539 IPR011990 GO:0005515
Vifa2g02827 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02827 Vifa-Chr2 790272750 790274675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02827 95 537 Glycoside Hydrolase AT3G49170 27.679 2.90e-60 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02827 - - gmx:102663822 767.303