Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02819 ATGGTTGGTAATTATAATCTGAAAACTGAGGATTTGAATTTGTCTTTTGAGAATCTTATGATGGTTGCTGGTGGTGAGAGAGGAGGGAATATGAAGATAGGTGTGATTACTGAATGGAAAGATATTCCTGTGGAGCTTTTGATGCATATTTTGTCACTCGTGGATGATCAGACGGTGATTAGAGCTTCTGGTGTTTGTCGTGGTTGGAGAGATTCTATTTACTTTGGACTTGCTCGTTTATCACTCTCTTGGTGTAACAAGAACATGAACAATTTGGTCATATCTCTTGTTCCAAAGTTTGCGAAATTGCAAACTCTGATCCTTCGTCAAGATAAGCCACAACTAGAGGATGGTGCTGTTGGGACTATTGCAAATTTCTGTCATGACTTGCAGATTCTTGACTTGAGCAAAAGTTTCAAGCTCACCGATTCATCACTGTATGCTATAGCCCATGGTTGTCGCGATCTTACAAAACTAAACATCAGTGGATGTTCAGCATTTAGTGACAAAGCTTTGGCCTACCTTGCTGGTTTCTGTAGAAAACTGAAAGTTCTAAATCTATGTGGATGTGTTAGAGCAGCCTCTGATGCTGCGCTTCAGGCTATTGGACACTACTGCAATCAGCTACAATCTTTGAACCTTGGATGGTGTGATGAGGTTAGTGATGTTGGAGTAATGAGTTTAGCATATGGCTGTCCTGATTTAAGAACAGTTGACTTGTGTGGCTGTCTCAAGATTACAGATGATAGTGTGATTGCTTTGGCAAACAGGTGCCCTCATCTGAGGTCCCTTGGACTGTATTTCTGCAAGAACATAACAGACAATGCAATGTATTCCTTGGCACAAAGCAAGGTTAAGAACAGGATGTGGGGAGCTGTGAAAGGAGGAAATGAAGAGGATGGACTAAGGAATTTGAACATTAGTCAGTGCACTTCACTCACTCCTCATGCTGTTCAGGCGGTTTGTGACTCATCCCCTGCTCTCCACACATGCTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTCAACTTGACTTCTGTTCATTGTGCTTGTGCTATTCATGCACACCGCGGAATCAACACCTTCCCTCATTCTGCTCATTAA 1107 0.4228 MVGNYNLKTEDLNLSFENLMMVAGGERGGNMKIGVITEWKDIPVELLMHILSLVDDQTVIRASGVCRGWRDSIYFGLARLSLSWCNKNMNNLVISLVPKFAKLQTLILRQDKPQLEDGAVGTIANFCHDLQILDLSKSFKLTDSSLYAIAHGCRDLTKLNISGCSAFSDKALAYLAGFCRKLKVLNLCGCVRAASDAALQAIGHYCNQLQSLNLGWCDEVSDVGVMSLAYGCPDLRTVDLCGCLKITDDSVIALANRCPHLRSLGLYFCKNITDNAMYSLAQSKVKNRMWGAVKGGNEEDGLRNLNISQCTSLTPHAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGINTFPHSAH 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02819 368 Pfam F-box domain 39 71 IPR001810 GO:0005515
Vifa2g02819 368 CDD F-box_AtSKP2-like 38 85 - -
Vifa2g02819 368 Gene3D Ribonuclease Inhibitor 35 295 IPR032675 -
Vifa2g02819 368 SMART LRR_CC_2 258 283 IPR006553 -
Vifa2g02819 368 SMART LRR_CC_2 127 152 IPR006553 -
Vifa2g02819 368 SMART LRR_CC_2 206 231 IPR006553 -
Vifa2g02819 368 SMART LRR_CC_2 153 178 IPR006553 -
Vifa2g02819 368 SMART LRR_CC_2 179 205 IPR006553 -
Vifa2g02819 368 SMART LRR_CC_2 299 324 IPR006553 -
Vifa2g02819 368 SMART LRR_CC_2 232 257 IPR006553 -
Vifa2g02819 368 PANTHER UNCHARACTERIZED 230 347 - -
Vifa2g02819 368 Pfam Leucine Rich repeat 206 229 IPR001611 GO:0005515
Vifa2g02819 368 Pfam Leucine Rich repeat 232 255 IPR001611 GO:0005515
Vifa2g02819 368 Pfam Leucine Rich repeat 258 281 IPR001611 GO:0005515
Vifa2g02819 368 SUPERFAMILY RNI-like 77 281 - -
Vifa2g02819 368 SUPERFAMILY F-box domain 38 73 IPR036047 GO:0005515
Vifa2g02819 368 FunFam F-box protein SKP2B 74 292 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02819 K03875 - gmx:100818928 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02819 2 787292611 787294497 Vifa2g02819 2 787292611 787294497 ECH